User: Lorenzo.Pavarini

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Posts by Lorenzo.Pavarini

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Comment: A: Differential Expression in bacteria RNA-seq
... Actually, I think that the problem could my in my GFF3 file. If I open it with excel it is like this ##gff-version 3 ##source-version geneious 9.1.8 MRx0004_ER_19051 Geneious CDS 1 1467 . + . ID=Chromosomal replication initiator protein DnaA CDS MRx0004_ ...
written 2 days ago by Lorenzo.Pavarini0 • updated 2 days ago by Jennifer Hillman Jackson25k
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Answer: A: Differential Expression in bacteria RNA-seq
... Good Afternoon, Right now I am trying to use the workflow by devikasub (https://usegalaxy.org/u/devikasub/w/workflow-constructed-from-history-gccworkflow-1) for the differential expression of my bacteria RNA. I follow the procedure and everything works great until **Cuffmerge**. Who give me this er ...
written 2 days ago by Lorenzo.Pavarini0 • updated 2 days ago by Jennifer Hillman Jackson25k
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Differential Expression in bacteria RNA-seq
... Hello, I got a problem in Cufflinks: I need to analyze fastq file from a RNA-seq (I got bacteria RNA),and I wuold like to use Bowtie2, Cufflinks, Cuffmerge and Cuffdiff to do the Differential Expression of 2 set of sample. I am just trying with 1 sample, The fastqc is ok Bowtie works But when I us ...
rna-seq cufflinks bacteria written 10 days ago by Lorenzo.Pavarini0

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