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Posts by drumarsohail
... Hi Jen Thanks It helped. I didn't define UCSC output file formate as GTF . Therefore galaxy couldn't recognize it. It was really very nice written tutorial. Thanks again. ...
HT-seq count does not recognize "gff" annotation dataset == assign GTF and consider an alternate annotation source
... Hi all I have been using galaxy tutorial for RNA-Seq of Drosophila malanogaster. I have done bwa mem, tophat2, and filter and sort steps. I have imported SFT file from UCSC and filtered it using c7 != "." Now I want to run htseq-count by selecting tophat accepted_hits vs **Filter on data file** ...
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