User: franziska.denk

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Posts by franziska.denk

<prev • 5 results • page 1 of 1 • next >
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galaxy generated bigwig files won't load from GEO
... I generated bigwig files on Galaxy which display nicely on the USCS browser via the direct link from Galaxy. However, when I subsequently downloaded these files onto my computer and submitted them to GEO, the http link created from them is no longer recognised by UCSC. It says unrecognised binar ...
bigwig geo written 2.4 years ago by franziska.denk0
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Comment: C: tophat tool stalled
... Hi Jen, Ah yes it appears to have fixed itself! Thanks for checking so quickly. Best wishes, Franziska ...
written 3.3 years ago by franziska.denk0
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tophat tool stalled
... Hi there,  I was a bit impatient earlier in the day and terminated tophat on the main galaxy tool while it was still loading its instructions to the history. It now refuses to run and is telling me "job submission failed" with the following code: {     "tool_id": "toolshed.g2.bx.psu.edu/repos/devt ...
software error written 3.3 years ago by franziska.denk0 • updated 3.3 years ago by Jennifer Hillman Jackson25k
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Comment: A: Cuffdiff output_version 2.2.1.1
... That's great thanks! looking forward to it.  ...
written 3.3 years ago by franziska.denk0
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Cuffdiff output_version 2.2.1.1
... It seems that the new version of the cuffdiff tool on the main galaxy mirror outputs an sqlite database ready to input into cummeRbund. However, you don't have the cummeRbund tool implemented?  What is the fastest way to get my output files extracted? I tried using RSQlite in R on my desktop but se ...
cuffdiff sqlite cummerbund written 3.3 years ago by franziska.denk0

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