User: eelynlim.13

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eelynlim.1330
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Posts by eelynlim.13

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Comment: C: Can I make a 'gene model for splice junctions' for use in RNA STAR inside Galaxy
... Thanks so much Jen, it's running now. I'll look up the rest of the stuff as I get to them! Really appreciate your help! ...
written 4 months ago by eelynlim.1330
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Comment: C: Can I make a 'gene model for splice junctions' for use in RNA STAR inside Galaxy
... Thanks Jen! That's super helpful. I've downloaded a file with the title 'gencode.vM17.primary_assembly.annotation.gtf', and uploaded in to Galaxy. I think this is the annotations file that you mention can be fed into RNA STAR, but for some reason it isn't being recognised as a valid file in the 'ge ...
written 4 months ago by eelynlim.1330
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Can I make a 'gene model for splice junctions' for use in RNA STAR inside Galaxy?
... I am a complete newbie to RNA-seq analysis. I am trying to follow online tutorials etc to learn the analysis by myself. I only have a bog-standard office desktop PC to work on, so I'm trying to do everything (as far as possible) in Galaxy. Trying to map reads with RNA STAR, it is asking for a 'gen ...
gtf galaxy gff3 star rna-seq written 4 months ago by eelynlim.1330 • updated 4 months ago by Jennifer Hillman Jackson25k

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