User: j.christopher.rounds

Reputation:
20
Status:
New User
Location:
Last seen:
2 months, 3 weeks ago
Joined:
3 months ago
Email:
j*******************@gmail.com

Posts by j.christopher.rounds

<prev • 4 results • page 1 of 1 • next >
0
votes
0
answers
140
views
0
answers
DESeq2 Fit Type Choice
... Hey folks, I am assessing results of gene-level differential expression testing with DESeq2, and I could use some help. I am trying to determine which fit type to use in (if I understand correctly) defining the curve to shrink dispersions/counts toward. I have 2 conditions (*Drosophila* wild type o ...
deseq2 galaxy fit type written 3 months ago by j.christopher.rounds20
0
votes
3
answers
317
views
3
answers
Comment: C: Unable to select GTF file from history in featureCounts (Galaxy version 1.6.0.3)
... Hey Jen, Thank you so much for your help with this, for your advice and explanation on gtf/gff file formats, and for performing those tests! I will definitely keep track of my database assignments and assign the appropriate sequences to any files to be analyzed. But, I do appreciate the insight into ...
written 3 months ago by j.christopher.rounds20
1
vote
3
answers
317
views
3
answers
Comment: C: Unable to select GTF file from history in featureCounts (Galaxy version 1.6.0.3)
... Hi Jen, Excellent - assigning the same database to both my BAM output file from STAR and to my GTF annotation file solves the problem, allowing me to select the GTF file from the featureCounts tool! Thank you so much for the help. That said, I am using a custom genome for alignment with STAR - spe ...
written 3 months ago by j.christopher.rounds20
5
votes
3
answers
317
views
3
answers
Unable to select GTF file from history in featureCounts (Galaxy version 1.6.0.3)
... Hello, I have recently begun mapping Drosophila RNA-Seq data with STAR (in Galaxy), and I am now attempting to count the number of reads aligning to features using featureCounts. Though the gtf file (from Ensembl) I provided to STAR is still in my Galaxy history, I am unable to select it in the fe ...
galaxy software error rna-seq written 3 months ago by j.christopher.rounds20 • updated 12 weeks ago by stephythomas2220

Latest awards to j.christopher.rounds

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 130 users visited in the last hour