User: v4savaishnavi

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Posts by v4savaishnavi

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(Closed) Variant calling query with Unified Genotyper (deprecated GATK tool)
... Hi, I am trying to do exome analysis for Single Nucleotide variants detection. I have a doubt on unified genotyper output specified below. Whether this output has any connection with variants. Does this output shows Variant calling information. Please help me regarding this query. Thanks in advanc ...
deprecated gatk exome unified genotyper written 12 hours ago by v4savaishnavi30 • updated 12 hours ago by Jennifer Hillman Jackson25k
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Comment: A: Server queue problem
... I am also facing this problem. Does this issue stay for a long time? ...
written 3 days ago by v4savaishnavi30
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Snpeff build error
... Hi, I am trying to do exome analysis among Solanum lycopersicum leaf curl mutants. I have followed exome analysis pipeline using Varscan in galaxy and obtained a VCF file. For doing annotation I need to build a Snpeff database for that I have uploaded an annotation file with genbank format 'GCF_000 ...
build database software error snpeff written 7 days ago by v4savaishnavi30 • updated 6 days ago by Jennifer Hillman Jackson25k

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