User: Ath.T

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Ath.T20
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20
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New User
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Last seen:
3 months, 1 week ago
Joined:
6 months, 1 week ago
Email:
************@hotmail.com

Posts by Ath.T

<prev • 10 results • page 1 of 1 • next >
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splitting BAM file to forward and revers
... Hello I am doing RNA-seq using use galaxy.org, I need to split the BAM file that has been generated by Bowtie 2 to forward and reverse files. Is there a possible way to do that? any suggestion?. Thanks ...
bam forward reverse rna-seq written 3 months ago by Ath.T20 • updated 3 months ago by Jennifer Hillman Jackson25k
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Excel file to gff file
... Hello I need to convert Excel file (xlsx) to GFF3 or GFF. Is there any way to do that, could you please help me?. Thanks ...
galaxy excel gff written 4 months ago by Ath.T20 • updated 4 months ago by Jennifer Hillman Jackson25k
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Erorr with runing cuffmerge
... Hello I am doing RNA-seq analysis, I am trying to run cuffmerge for assembled transcripts files that have been generated by cufflinks but I have got the following error: Fatal error: Error running cuffmerge: [Fri Jul 13 04:32:00 2018] Beginning transcriptome assembly merge [Fri Jul 13 04:32: ...
cuffmerge rna-seq written 4 months ago by Ath.T20 • updated 4 months ago by Jennifer Hillman Jackson25k
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Comment: C: galaxy history deleted permanently but used space still full 100% (urgent)
... The problem has been solved ...
written 4 months ago by Ath.T20
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(Closed) galaxy history deleted permanently but used space still full 100% (urgent)
... Hello, I am doing RNA-seq analysis (use galaxy.com) but I can not complete it or do anything as the used space is full, although I deleted the old histories and the most of the files( I have only few files with around 18 GB). I tried to log off and then back but nothing change and the used sp ...
full rna-seq galaxy used space written 4 months ago by Ath.T20
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An error with htseq
... Hello, I am doing RNA-seq analysis using use galaxy.org, I am trying to run htseq-count but in each trial I get the following error: ''Error occured when processing GFF file (line 4513 of file /galaxy-repl/main/files/026/107/dataset_26107306.dat):Feature id1728 does not contain a 'gene_.'' I ha ...
htseq rna-seq galaxy error written 4 months ago by Ath.T20
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Need to GFF file for RNA-seq analysis
... Hello, I am doing RNA-seq analysis using use galaxy.org, I want to run htseq but I do not know how can I get GFF file for bacterial strain (Streptomyces). Could you please help me to get it ?. What is the difference between the reference genome that is used in the mapping and the annotated f ...
htseq rna-seq bacteria gff written 4 months ago by Ath.T20
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Comment: A: Server queue problem
... I have the same problem , my jobs are queued since long time. ...
written 6 months ago by Ath.T20
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Changing the content of the BED file columns to be recognized by genome browser
... Hello I am doing RNA-seq analysis using usegalaxy.com and this is my first time to do that. I have a problem in the bed file, UCSC genome browser does not recognize the file, as it does not contain ''chr1'' in the QNAME column. The BED file that I`ve created as the following: (The format of the ge ...
bed ucsc microbial rna-seq written 6 months ago by Ath.T20 • updated 6 months ago by Jennifer Hillman Jackson25k
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Problems with the Upload function at https://usegalaxy.org -- Workaround included, follow for updates
... Hello I am new in Galaxy (usegalaxy.org). I am trying to load fastq.gz files in galaxy from FTP, but it is very slow. The job still yellow with circling dots from 6 hours until now and I am still waiting for completing the loading. What should I do? Is it okay to take long time so I have to wait? ...
galaxy usegalaxy.org upload fastq written 6 months ago by Ath.T20 • updated 6 months ago by Jennifer Hillman Jackson25k

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