User: mlwright

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mlwright30
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New User
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2 weeks, 3 days ago
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5 months ago
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m*****************@gmail.com

Posts by mlwright

<prev • 12 results • page 1 of 2 • next >
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Comment: C: An error while using Interval2MAF1 tool on usegalaxy.org
... I have been getting the same error with Stitch MAF Blocks on Galaxy main. However, I am currently using usegalaxy.eu and Stitch MAF Blocks is working for me, so I suspect Interval2MAF1 would work there as well. ...
written 5 weeks ago by mlwright30
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Comment: C: Error when trying to stitch MAF blocks
... It seemed like Stitch MAF Blocks had been working fine for the past several weeks, but I am experiencing this issue again. Same "maximum recursion depth exceeded" error in Stitch MAF Blocks. I submitted a bug report for it about a week ago, but wanted to bring it to your attention again. ...
written 6 weeks ago by mlwright30
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Comment: C: Upload at Galaxy Main https://usegalaxy.org producing error
... I submitted a bug report earlier, but if it's possible to update it somehow, I'd be happy to update with a link to this post. As it stands, I am now able to get my files onto Galaxy, but downstream applications (in this case, Extract Genomic DNA) fail with "tool error" and "failure preparing job scr ...
written 8 weeks ago by mlwright30
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Comment: C: What is Internal Server Error (500)?
... I am experiencing a similar problem that started in the same time frame. I am not getting an Internal Server Error, but I also cannot upload any files. I am working with small (~4kb) interval files, but their upload fails almost immediately and only states "tool error". ...
written 8 weeks ago by mlwright30
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Comment: C: No space left on device error
... I'm experiencing the same problems lately. Really long wait times and the "No space left on device" error. ...
written 11 weeks ago by mlwright30
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Comment: C: Job not running
... I've also been noticing this today and yesterday ...
written 11 weeks ago by mlwright30
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Error while trying to filter files
... Hi, I am using the Galaxy Main server to try and filter an interval file by one of the columns, and most attempts have been failing with the error message: `slurmstepd: error: xcgroup_instantiate: unable to create cgroup '/sys/fs/cgroup/memory/slurm/uid_819800/job_14099233' : No space left on devi ...
software error written 11 weeks ago by mlwright30
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Comment: C: Is it possible to group many MAF files?
... Fantastic, thank you! ...
written 12 weeks ago by mlwright30
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Is it possible to group many MAF files?
... Hi, I have an interval file with ~100 sequences from hg38 that I am trying to extract multiple alignments from. Currently, I have 25 MAF files (Chr 1-22, X, Y, M) from hg38 uploaded, but when I Stitch MAF Blocks for one of my MAF files, I get a bunch of empty alignments for stuff on other chromosom ...
maf text-mani cat alignment merge written 12 weeks ago by mlwright30 • updated 12 weeks ago by Jennifer Hillman Jackson25k
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Error when trying to stitch MAF blocks
... Hi, I am trying to stitch multiple alignments from about 25 species in the 100-way multiZ MAF on usegalaxy.org. I am using an interval file with hg19 coordinates, lifted over from hg38 coordinates. I can successfully extract genomic coordinates with the same data, so I don't know if this is a probl ...
software error alignment written 3 months ago by mlwright30 • updated 3 months ago by Jennifer Hillman Jackson25k

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