User: mlwright

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mlwright30
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2 months, 1 week ago
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6 months, 3 weeks ago
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m*****************@gmail.com

Posts by mlwright

<prev • 12 results • page 1 of 2 • next >
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Comment: C: An error while using Interval2MAF1 tool on usegalaxy.org
... I have been getting the same error with Stitch MAF Blocks on Galaxy main. However, I am currently using usegalaxy.eu and Stitch MAF Blocks is working for me, so I suspect Interval2MAF1 would work there as well. ...
written 3 months ago by mlwright30
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Comment: C: Error when trying to stitch MAF blocks
... It seemed like Stitch MAF Blocks had been working fine for the past several weeks, but I am experiencing this issue again. Same "maximum recursion depth exceeded" error in Stitch MAF Blocks. I submitted a bug report for it about a week ago, but wanted to bring it to your attention again. ...
written 3 months ago by mlwright30
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Comment: C: Upload at Galaxy Main https://usegalaxy.org producing error
... I submitted a bug report earlier, but if it's possible to update it somehow, I'd be happy to update with a link to this post. As it stands, I am now able to get my files onto Galaxy, but downstream applications (in this case, Extract Genomic DNA) fail with "tool error" and "failure preparing job scr ...
written 3 months ago by mlwright30
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Comment: C: What is Internal Server Error (500)?
... I am experiencing a similar problem that started in the same time frame. I am not getting an Internal Server Error, but I also cannot upload any files. I am working with small (~4kb) interval files, but their upload fails almost immediately and only states "tool error". ...
written 3 months ago by mlwright30
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Comment: C: No space left on device error
... I'm experiencing the same problems lately. Really long wait times and the "No space left on device" error. ...
written 4 months ago by mlwright30
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Comment: C: Job not running
... I've also been noticing this today and yesterday ...
written 4 months ago by mlwright30
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Error while trying to filter files
... Hi, I am using the Galaxy Main server to try and filter an interval file by one of the columns, and most attempts have been failing with the error message: `slurmstepd: error: xcgroup_instantiate: unable to create cgroup '/sys/fs/cgroup/memory/slurm/uid_819800/job_14099233' : No space left on devi ...
software error written 4 months ago by mlwright30
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Comment: C: Is it possible to group many MAF files?
... Fantastic, thank you! ...
written 4 months ago by mlwright30
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Is it possible to group many MAF files?
... Hi, I have an interval file with ~100 sequences from hg38 that I am trying to extract multiple alignments from. Currently, I have 25 MAF files (Chr 1-22, X, Y, M) from hg38 uploaded, but when I Stitch MAF Blocks for one of my MAF files, I get a bunch of empty alignments for stuff on other chromosom ...
maf text-mani cat alignment merge written 4 months ago by mlwright30 • updated 4 months ago by Jennifer Hillman Jackson25k
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Error when trying to stitch MAF blocks
... Hi, I am trying to stitch multiple alignments from about 25 species in the 100-way multiZ MAF on usegalaxy.org. I am using an interval file with hg19 coordinates, lifted over from hg38 coordinates. I can successfully extract genomic coordinates with the same data, so I don't know if this is a probl ...
software error alignment written 5 months ago by mlwright30 • updated 5 months ago by Jennifer Hillman Jackson25k

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