User: theodorcrispin

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Posts by theodorcrispin

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RNA STAR and HISAT2 job errors (memory failures)
... Hi I prevously wrote about the RNA STAR program running out of memory for my wheat alignment. At oyur suggestion I tried using HISAT2 instead. However, HISAT2 gives me an exit code 137 after a while. Can someone please help me? Best Theodor Crispin ...
hisat2 rna-seq star memory error written 8 weeks ago by theodorcrispin0 • updated 8 weeks ago by Jennifer Hillman Jackson25k
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RNA STAR error
... Hi, I was just trying out RNA STAR for the first time using deafult settings and a reference genome and annotation from NCBI of wheat. It gives me an error after a few minutes of running saying: slurmstepd: error: Job 3008889 exceeded memory limit (151071308 > 150994944), being killed slurmstep ...
rna star hisat2 memory-error star written 8 weeks ago by theodorcrispin0 • updated 8 weeks ago by Jennifer Hillman Jackson25k
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A tool is marked deprecated, should I use it?
... Hi, im following a guide about how to analyse RNAseq data to do differential expression analysis. However one of the tools in the guide, TopHat, is deprecated. What does that mean? Analyses seem to never complete, stays in a queue. Best Theodor ...
hisat2 tutorials tophat queue rna-seq written 3 months ago by theodorcrispin0 • updated 3 months ago by jevanveen10

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