User: jevanveen

gravatar for jevanveen
jevanveen10
Reputation:
10
Status:
New User
Location:
Last seen:
1 month, 2 weeks ago
Joined:
3 months ago
Email:
j********@alum.mit.edu

Posts by jevanveen

<prev • 3 results • page 1 of 1 • next >
0
votes
2
answers
151
views
2
answers
Answer: A: A tool is marked deprecated, should I use it?
... TopHat has been largely replaced by newer algorithms. Is there a reason you must use TopHat? If not, it's better to proceed with a pipeline using Hisat2 or Star for alignment dependent fragment counting or Kallisto or Salmon for alignment independent fragment counting. I've used Star followed by DEs ...
written 3 months ago by jevanveen10
1
vote
1
answer
96
views
1
answer
MultiQC Salmon output
... Hello! Has anyone had success pulling data from Salmon into MultiQC? It doesn't appear as an option in the version of MultiQC on the main Galaxy instance but maybe someone has done this with the "custom input" parameter? If not, perhaps the version of MultiQC on the main Galaxy instance can be u ...
galaxy multiqc salmon rna-seq written 3 months ago by jevanveen10 • updated 3 months ago by Jennifer Hillman Jackson25k
1
vote
3
answers
1.5k
views
3
answers
Answer: A: salmon gene quant to DESeq2
... i had the same issue and resolved it as follows: inputs: salmon quantification (not gene quant) files generated in Galaxy salmon transcript to gene map - tab delimited text file from ensembl when i run as is, i get the line2/6elements error. the fix was simple - i removed header line from the ta ...
written 3 months ago by jevanveen10

Latest awards to jevanveen

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 149 users visited in the last hour