User: mblue9

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mblue9100
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Posts by mblue9

<prev • 4 results • page 1 of 1 • next >
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Answer: A: edgeR Reading Error
... I think it's the missing header that's causing the issue for you, HTSeq doesn't output one. So you can either manually add a header row with the sample ids to the counts files you have, or use featureCounts instead of HTSeq as that will output a header row and should work fine with edgeR. ...
written 8 weeks ago by mblue9100
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Answer: A: Content of the built-in hg38 genome annotation available in Featurecounts
... Hi Mercedes, The built-in annotation files used by featureCounts can be found within the Subread package here: https://sourceforge.net/projects/subread/files/ But those files have no gene names, just the Entrez gene identifiers (e.g. 497097). If you want gene names you can get those for the Entre ...
written 5 months ago by mblue9100
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Answer: A: Featurecounts' added built-in annotations
... Thanks a lot for this feedback! It's great to know other people are finding the built-in annotations useful (as am I) :) Btw in case this is useful to you to know, I'm finding that the output of featureCounts with those built-in Entrez/RefSeq IDs is working well with the Galaxy tools annotateMyIDs ...
written 7 months ago by mblue9100
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Answer: A: Galaxy fatal error running Cutadapt
... Hello, Sorry to hear you're having problems with cutadapt. I was the one who updated the Galaxy wrapper recently and we have it installed in 17.09, I've only used it a little bit so far but it seems to be working fine. But note that there are currently some limitations with cutadapt's parallel/mul ...
written 7 months ago by mblue9100

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Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: edgeR Reading Error

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