User: mdgronke

gravatar for mdgronke
mdgronke10
Reputation:
10
Status:
New User
Location:
Last seen:
1 week, 4 days ago
Joined:
1 month, 2 weeks ago
Email:
m*******@ncsu.edu

Posts by mdgronke

<prev • 4 results • page 1 of 1 • next >
1
vote
2
answers
82
views
2
answers
Comment: C: Creating simple tool to downsample sam files, doesn't complete
... I'll check out the downsampling tool, thanks. We're migrating from Mobyle so at the moment I'm trying to figure out which tools already exist in the toolshed. As far as planemo, I have ran a lint on it and it said it validated the xml tags, so I didn't know where the problem lay. ...
written 26 days ago by mdgronke10
2
votes
2
answers
82
views
2
answers
Creating simple tool to downsample sam files, doesn't complete
... I've written a simple tool to downsample files with a script I am running. It appears to run successfully from the std.err output, but it gives a fail when I run it in Galaxy. I'm trying to figure out what's going on. Here's the code: Downsamples a SAM file downsample_ ...
galaxy xml sam mytools tools written 26 days ago by mdgronke10 • updated 26 days ago by Jennifer Hillman Jackson25k
0
votes
1
answer
76
views
1
answers
Answer: A: "When available, install externally managed dependencies (e.g. conda)? Beta" is
... I figured out the problem. I did not have bzip2 installed, which meant the conda install did not properly work. It was shown here when I deleted the _conda/ folder and tried re-running run.sh. galaxy.tools.deps.conda_util INFO 2018-04-06 15:32:19,516 Installing conda, this may take several minutes ...
written 6 weeks ago by mdgronke10
0
votes
1
answer
76
views
1
answer
"When available, install externally managed dependencies (e.g. conda)? Beta" is nowhere to be found. How to fix?
... I believe I'm running the latest version of Galaxy Project, as I installed it from the site last week, so version 18,01 I am trying to install Trimmomatic from the Tool Shed. I get the message that: "*This repository defines tool requirements that cannot be installed through the Tool Shed.Please ac ...
galaxy conda written 6 weeks ago by mdgronke10

Latest awards to mdgronke

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 129 users visited in the last hour