User: encarnaciona

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encarnaciona20
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2 months ago
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3 months, 2 weeks ago
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e***********@uthscsa.edu

Posts by encarnaciona

<prev • 7 results • page 1 of 1 • next >
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htseq-count outputting 3 files
... Hello, I running an htseq using some HISAT2 files. I'm noticing this time through that the htseq-count is outputting 3 jobs. The first, a (no feature), and a (BAM) output. I didn't have the (BAM) output the first time I ran through samples with this server. I am also noticing that an error is arisin ...
htseq bam file rna-seq written 9 weeks ago by encarnaciona20 • updated 9 weeks ago by Jennifer Hillman Jackson25k
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Comment: C: Error in DESeq2
... Thank you; I actually hadn't seen that link! ...
written 3 months ago by encarnaciona20
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Comment: C: Error in DESeq2
... Thank you so much, Jennifer! ...
written 3 months ago by encarnaciona20
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Error in DESeq2
... Hello, I'm trying to run a DESeq2 analysis of my ten RNASeq Samples. I successfully was able to use the htseq analysis for these, generating one file with counts and one file listed as (no feature) for each of the 10 samples. From there I've been trying in vain to do DESeq2. I name the factor and ...
deseq2 rna-seq written 3 months ago by encarnaciona20 • updated 3 months ago by n.goue50
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Comment: C: Fatal Errors occurring with htseq analysis
... Hi, I'm trying to find errors similar to mine, and I'm not seeing a way to fix this. I've tried converting the genome to a GTF file, but I'm still getting the same errors. ...
written 3 months ago by encarnaciona20
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(Closed) Fatal Errors occurring with htseq analysis
... Hi, I am in the process of analyzing some RNAseq data. I uploaded the data and successfully mapped the sequences to the the C. elegans genome using the HISAT2 program. Currently I am trying to convert my map reads to gene counts using the htseq-count program but keep encountering a fatal error: Fat ...
htseq mismatch annotation format rna-seq written 3 months ago by encarnaciona20 • updated 3 months ago by Jennifer Hillman Jackson25k
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Files appeared in History 3 times larger than uploaded.
... Hi, This is my first time using Galaxy. I uploaded files from an FTP that were fastq.qz formatted files of 3-4GB in size each, but upon completion of upload, the files were in fastsanger format at rough 16GB a piece. Was there something I missed during the upload? Should I re-upload the files? As o ...
quota datatype ftp upload account written 3 months ago by encarnaciona20 • updated 3 months ago by Jennifer Hillman Jackson25k

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