User: chenzhuod

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chenzhuod0
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Posts by chenzhuod

<prev • 7 results • page 1 of 1 • next >
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How to set 'set at runtime'
... Hi, I construct a workflow in local galaxy. and in a custom tool added by myself I want to set a parameter at runtime. How to set it? Thanks, Siyuan ...
tool galaxy select-at-runtime workflow parameter written 10 days ago by chenzhuod0 • updated 8 days ago by Jennifer Hillman Jackson24k
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Comment: C: GMAP error: invalid literal for int() with base 10
... Thanks a lot ! and I add a custom GMAP to my local galaxy, eventually. Another question about GMAP. I want to align genes to different reference sequences. but I'm not sure how many refererence sequences exactly. So, I hope to make a judge. It means if users have one reference, he just can align ge ...
written 14 days ago by chenzhuod0
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trinity error: possible unintended interpolation of @2 in string...
... Hi, when I run trinity in local galaxy, it is error: Fatal error: Exit code 2 () Possible unintended interpolation of @2 in string at /home/malab10/software/galaxy/database/dependencies/_conda/envs/__trinity@2.4.0/bin/Trinity line 43. what can I solve it? ...
input local galaxy memory trinity written 22 days ago by chenzhuod0 • updated 15 days ago by Jennifer Hillman Jackson24k
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GMAP error: invalid literal for int() with base 10
... Hi, I run gmap in local galaxy, but tool error: invalid literal for int() with base 10:'--split-output=gmap_out' sometimes just " invalid literal for int() with base 10:'' " How can I solve? Thanks Siyuan Chen ...
input local galaxy format gmap written 22 days ago by chenzhuod0 • updated 15 days ago by Jennifer Hillman Jackson24k
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Comment: C: add custom tools to local galaxy
... Thanks, I've revised the xml file. Another question. When fqtrim is running, galaxy could create a tmp file. In the bash file of the tmp file, directory of utput file could be added automatically. How can I control it? I mean, I don't need the directory of output file. Chen Siyuan ...
written 26 days ago by chenzhuod0
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add custom tools to local galaxy
... hi, I'm installing tools to galaxy, but some tools are not existed in tool shed, such as fqtrim. So, I install them by the method according to https://galaxyproject.org/admin/tools/add-tool-tutorial/. But, it can not be found in my galaxy, I think the problem is xml file. can be ...
galaxy tool_conf.xml admin tool planemo written 5 weeks ago by chenzhuod0 • updated 5 weeks ago by Jennifer Hillman Jackson24k
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Comment: C: install all tools from repositories
... hello, I want to install a software not exsit in Tool Shed. The software is a custom software, such as "fqtrim". can you guide me? Best Siyuan Chen ...
written 5 weeks ago by chenzhuod0

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