User: jay

gravatar for jay
jay20
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20
Status:
New User
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Last seen:
5 months, 3 weeks ago
Joined:
7 months, 3 weeks ago
Email:
j*****@me.com

Posts by jay

<prev • 6 results • page 1 of 1 • next >
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files not found using Galaxy with Pulsar
... Hi, Hoping some can help me with my issue with Pulsar and Galaxy. I have installed tools and some of the tools are failing because it cannot find specific files when running them in Pulsar. All of them works if the destination is set to local without any issue I have some Examples below: **Kalip ...
galaxy pulsar written 6 months ago by jay20 • updated 6 months ago by Jennifer Hillman Jackson25k
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Comment: C: error on job submission using galaxy and slurm tool fastqc
... Thanks Jennifer the file contains invalid charaters ...
written 7 months ago by jay20
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Comment: C: error on job submission using galaxy and slurm tool fastqc
... Hi, The filename doesn't have quotation marks ...
written 7 months ago by jay20
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Fasta dataset contains non-ATCGN characters and fails with FastQC
... Hi, I am getting this error on job submission. it is just a subset of the error. Not all files gives me this error. How to resolve this? File "/opt/galaxy-user/galaxy-17.09-github/.venv/lib/python2.7/site-packages/MySQLdb/connections.py", line 208, in unicode_literal return db.literal(u.enco ...
dataset datatype fastqc content fasta written 7 months ago by jay20 • updated 7 months ago by Jennifer Hillman Jackson25k
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Answer: A: Setting up slurm and Galaxy
... Thank you Jennifer for the response **I got pulsar working with the config below on job_conf.xml where the URL points to pulsar which is a different server.** **http://10.22.22.222:8913/** -P bignodes -R y -pe threads 16 remote **I got sl ...
written 7 months ago by jay20
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Setting up slurm and Galaxy
... Hi, Do anyone here know how to properly configure the job_conf.xml to point to a remote slurm server? Thanks for the help ...
slurm job_conf.xml galaxy cluster config written 7 months ago by jay20 • updated 15 days ago by sysadmin.caos0

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