User: jenyka_dm

gravatar for jenyka_dm
jenyka_dm10
Reputation:
10
Status:
New User
Location:
Last seen:
4 months ago
Joined:
6 months, 4 weeks ago
Email:
j********@yahoo.com

Posts by jenyka_dm

<prev • 20 results • page 1 of 2 • next >
0
votes
0
answers
215
views
0
answers
Choosing relevant MACS2 peaks
... Hi all! I have (probably very naive) questions regarding the choice of peaks that were generated by MACS2. I have done chip-seq on a chromatin binding protein (not TF) using arabidopsis tissues . After analysis, MACS2 gives me approximately 2200 peaks which I later annotated. At this point, I am no ...
chip-seq written 4 months ago by jenyka_dm10
0
votes
0
answers
130
views
0
answers
(Closed) jobs gray for too long
... Hi! I am trying to upload some data into galaxy, but the jobs stay gray. Is there a problem with the software or am I possibly doing something wrong? Thanks! ...
software error written 4 months ago by jenyka_dm10
0
votes
1
answer
283
views
1
answers
Comment: C: adding genomes in igb
... Thanks you!! The link worked!! ...
written 5 months ago by jenyka_dm10
0
votes
1
answer
283
views
1
answers
Comment: C: adding genomes in igb
... I will try to use the link you have sent to extract again ...
written 5 months ago by jenyka_dm10
0
votes
1
answer
283
views
1
answers
Comment: C: adding genomes in igb
... Windows, when I right click on the file it doesn't even give me the option of extract/unzip. On the top of the window, where "extract" tab is, all options are unavailable... ...
written 5 months ago by jenyka_dm10
0
votes
1
answer
283
views
1
answers
Comment: C: adding genomes in igb
... Is there maybe a way that I could convert the formats? ...
written 5 months ago by jenyka_dm10
0
votes
1
answer
283
views
1
answers
Comment: C: adding genomes in igb
... Hi! Thank you for the advice! But it wouldn't let me unzip the file. The icon is also not of a zipped file though... It's just a plain paper instead of the folder with the zip.... ...
written 5 months ago by jenyka_dm10
3
votes
1
answer
283
views
1
answer
adding genomes in igb
... Hi, I am trying to visualize the streptomyces hygroscopicus genome on igb. But IGB doesn't have this genome. I downloaded the genome from ensembl and NCBI, but I cannot load it into IGB (the file is a fa.gz file). Could you tell me how could I do that? Thanks! ...
custom genomes prokaryotic genome igb written 5 months ago by jenyka_dm10 • updated 5 months ago by nowlan.freese20
0
votes
1
answer
256
views
1
answer
Diffbind and repmatch fatal error
... Hi! I have 3 chip replicates and I want to find common peaks within them. I used diffbind to do so, however when I run diffbind on my replicates, I get a fatal error Fatal error: An undefined error occured, please check your intput carefully and contact your administrator. 1-831 Inf ER Reg 1 raw 2- ...
chip-seq diffbind written 6 months ago by jenyka_dm10 • updated 6 months ago by Jennifer Hillman Jackson25k
0
votes
1
answer
187
views
1
answer
bowtie2 generates a fatal error
... Hi, I am trying to map 6 fastq file using bowtie2. Some of the jobs are completed but some of them generate an error. Here is the error screen. Fatal error: Exit code 1 () 29788577 reads; of these: 29788577 (100.00%) were unpaired; of these: 2314601 (7.77%) aligned 0 times 20456754 (68. ...
bowtie2 usegalaxy.org error written 6 months ago by jenyka_dm10 • updated 6 months ago by Jennifer Hillman Jackson25k

Latest awards to jenyka_dm

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 151 users visited in the last hour