User: human

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human10
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Posts by human

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Answer: A: GEO SRA fastq-dump with very low mapping rate (Galaxy)
... Hey Jennifer, just to give the solution to my prevoius problem. Fastq upload files were wrong and not the supposed files, therefore very low mapping rate. We requested GEO to correct this issue. Best Human ...
written 3 months ago by human10
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GEO SRA fastq-dump with very low mapping rate (Galaxy)
... Dear Biostars, I am a quite unexperienced biologist doing a metaanalysis of RNA-seq/microarray expression data using Galaxy and I get very low mapping percentage (0.5-1.7 %) with one particular GEO dataset. I have tested 3 other Datasets and mapping with BWA (same parameters) works like a charm (80 ...
galaxy alignment rna-seq written 6 months ago by human10

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