User: Learner

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Learner 10
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Posts by Learner

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Comment: C: Why are all my Feature counts "0" ?
... @Jennifer Hillman Jackson I tested it with two account and both failed. Please check your email ...
written 8 days ago by Learner 10
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Comment: C: Why are all my Feature counts "0" ?
... @Jennifer Hillman Jackson I can obtain count with feature count but not htseq-count. It gives an error. can you please check it out? ...
written 8 days ago by Learner 10
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Comment: C: Why are all my Feature counts "0" ?
... @Jennifer Hillman Jackson thank you so much for your detailed explanation. some people say that UCSC is outdated and has so many problem in their genome data. they always refer to ensemble for example. I don't know if this is true or not :-) but you know in this field any person say something new a ...
written 9 days ago by Learner 10
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Comment: C: Why are all my Feature counts "0" ?
... @Jennifer Hillman Jackson are you sure? because I am pretty sure that I selected the hg19!!! my bad. I am sorry if I caused you any problem. one question, so there are several hg19. I select the hg19 and not the other ones like canonical etc. just what about the gft file for the htseq-count? should ...
written 9 days ago by Learner 10
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Comment: C: Why are all my Feature counts "0" ?
... @Jennifer Hillman Jackson Thanks ...
written 9 days ago by Learner 10
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Comment: C: Why are all my Feature counts "0" ?
... @Jennifer Hillman Jackson unfortunately it is zero again. I sent an email to the email address you have mentioned ...
written 9 days ago by Learner 10
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Comment: C: Why are all my Feature counts "0" ?
... @Jennifer Hillman Jackson Hi, should I get the Comprehensive gene annotation ? or another one? ...
written 9 days ago by Learner 10
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Why are all my Feature counts "0" ?
... I am trying to analyse a data using galaxy. as an example I use this data https://www.ebi.ac.uk/ena/data/view/PRJNA338610 then I load the irst two reads as forward and reverse , then run the HISAT2 with human hg19 . Afterwards, I used the featurecount with gencode.v27.primary_assembly.annotation.gtf ...
hg38 mismatch gtf hg19 featurecounts written 9 days ago by Learner 10 • updated 9 days ago by Jennifer Hillman Jackson24k
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how to perform alignment using Hisat2
... Actually I have several questions to ask but I try to be very much to the point. I want to upload data from ftp (ebi.ac.uk) into galaxy and then align them by HISAT2 and then extract the htseq-count. Simply I long in into galaxy, then I click on https://www.ebi.ac.uk/ena/data/ and then search for ...
alignment rna-seq written 11 days ago by Learner 10 • updated 10 days ago by Jennifer Hillman Jackson24k

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