User: luisafermercadom

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Posts by luisafermercadom

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Answer: A: Get multimapped reads from STAR in Galaxy.
... Thank you, I could easily separate the multi-mapped reads using NGS: BamTools > Filter BAM datasets on a variety of attributes ...
written 7 weeks ago by luisafermercadom0
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Get multimapped reads from STAR in Galaxy.
... Hi, Using RNA STAR in Galaxy to map my yeast read back to the genome: (single end reads), I'm getting a huge number of multi-mapped reads (40-60%). I want to get those multimapped reads, so I can look at them ... How do I write out a multi-mapped reads file from Galaxy? (We do not have an instan ...
bam filter sam rna-seq fastq written 7 weeks ago by luisafermercadom0
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STAR: command not found
... Hi, I am trying to run RNA STAR from the galaxy platform and I get the following error: /galaxy-repl/main/jobdir/018/294/18294273/tool_script.sh: line 9: STAR: command not found I run this tool a few days ago on the same dataset and with the same settings and it worked well. I do not know how to ...
rna-seq software error usegalaxy.org star error written 3 months ago by luisafermercadom0 • updated 3 months ago by Jennifer Hillman Jackson25k

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