User: migueljuliamolina

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Posts by migueljuliamolina

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Comment: C: Personalised tool not running in local galaxy (always yellow but not sending com
... Hello migueljuliamolina! We believe that this post does not fit the main topic of this site. Problem solved For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If you disagree please tell us why in a reply below, ...
written 9 months ago by migueljuliamolina0
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Comment: C: Personalised tool not running in local galaxy (always yellow but not sending com
... Problem solved! It was due to launching the job thru galaxy job manager. For some reason it gives problems if a bash script reads from /dev/urandom and gets hung there forever. I replaced that line in my script for another way of generating random strings and now it works. ...
written 9 months ago by migueljuliamolina0
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Comment: C: Personalised tool not running in local galaxy (always yellow but not sending com
... Thanks for the help, but the problem is still there. The job is submitted but it never starts running the "IRMA" command. I have tried changing it for a simple "mkdir $output_folder" to check and it works, so there have to be a reason why that command does not start running. If executed "tool_scri ...
written 9 months ago by migueljuliamolina0
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Comment: C: Personalised tool not running in local galaxy (always yellow but not sending com
... I am going to add my xml file as extra info, just in case the problem is there: FLU 0.6.7 ...
written 9 months ago by migueljuliamolina0
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Comment: C: Error uploading files - no data
... Fixed, the problem is the whitespaces in the code of the tutorial: https://docs.galaxyproject.org/en/master/admin/special_topics/nginx.html ...
written 9 months ago by migueljuliamolina0
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(Closed) Personalised tool not running in local galaxy (always yellow but not sending command)
... Hi, I am creating a wrapper to run a personalised tool in my local galaxy installation. I tested that the script works in my machine, that galaxy works with tools from the shed and that the dummy example of how to add a personalised tool also works (https://galaxyproject.org/admin/tools/add-tool-tu ...
galaxy written 9 months ago by migueljuliamolina0 • updated 9 months ago by Jennifer Hillman Jackson25k
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Comment: C: Error uploading files - no data
... Hi, I have the same problem @matthias.desmet had, but running galaxy under centOS6.9. Also, I am using nginx to serve galaxy and manage uploads and downloads. When trying to upload a local file through the interface to our local Galaxy instance I'm getting a Failed: Bad Request (400) error. The Ga ...
written 9 months ago by migueljuliamolina0

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