User: liuc

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liuc0
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Posts by liuc

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Comment: C: data orders in plotcorrelation
... Hi Devon, Thank you for the updating the tools. However, I still have the issue about the arrange the order of my samples. The plotCorrelation tool doesn't follow what I set the order of the samples. The output doesn't really follow the order on the history either. The plotCorrelation version Gala ...
written 5 days ago by liuc0
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can't see the newly generated multiBigwigSummary file
... Hi , I used deeTools to generate a multiBigwig Summary files in order to use for plotCorrelation . The mitiBigwig file was finished. However, when I try to use plotCorrelation, I can't see the newly generated multiBigwig file in the drop-down list. Is this a bug? Does any one have the same issue? Th ...
datatype galaxy written 5 days ago by liuc0 • updated 5 days ago by Jennifer Hillman Jackson25k
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Answer: A: multiBamSummary in DeepTools_sample order did not match to the entry
... mutBamsummary is 2.5.0.0 and plotCorrelation is 2.5.0.0. Thanks ...
written 11 weeks ago by liuc0
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multiBamSummary in DeepTools_sample order did not match to the entry
... Hi Everyone, I tried to plot the correlation plots using the DeepTools on the web base Galaxy. I first use multiBamsymmary to organize th Bam files in an order I would like it appears on the plot then use plotCorrelation to create the heatmap. However, the sample order on the plot did not show exa ...
chip-seq output deeptools format multibamsummary written 12 weeks ago by liuc0
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Jobs are not running
... I am using bamCoverage from deepTools for 7 datasets. Jobs have been created more than 24 hours ago , but the status is still waiting for job running... Job Information Galaxy Tool ID: toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/2.5.0.0 Galaxy Tool Version: ...
chip-seq bam written 5 months ago by liuc0 • updated 5 months ago by jb_julla0

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