User: nhung

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nhung0
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University of Maryland, College Park
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1 month, 2 weeks ago
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4 months ago
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n****@terpmail.umd.edu

Posts by nhung

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bam_index_build2() not yet implemented exception on local Galaxy instance - sam-to-bam
... Hi, I'm trying to run a basic workflow consisting of just Map with Bowtie for Illumina, Filter SAM, and SAM-to-BAM. Right now I get an error at the SAM-to-BAM step that says: `Exception: Error Setting BAM Metadata: Samtools-htslib-API: bam_index_build2() not yet implemented`. I'm feeding the workfl ...
bam samtools bam_index_build2() sam written 6 weeks ago by nhung0 • updated 6 weeks ago by Jennifer Hillman Jackson25k
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Comment: C: SAM-to-BAM 'Failed runtime validation of Using reference genome' Error - Local G
... Thank you! It was indeed a missing index for Samtools. However, now when I run the workflow I get Exception: Error Setting BAM Metadata: Samtools-htslib-API: bam_index_build2() not yet implemented I read this post: https://biostar.usegalaxy.org/p/9335/ and am using samtools ver. 0.1.19 (ver ...
written 3 months ago by nhung0
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SAM-to-BAM 'Failed runtime validation of Using reference genome' Error - Local Galaxy instance
... Hi, I'm trying to run a workflow on a local Galaxy instance that has these steps in the beginning: Map with Bowtie for Illumina, Filter SAM, SAM-to-BAM, ... Everything goes well up to the SAM-to-BAM step, where I get a LateValidationError: Traceback (most recent call last): File "/data ...
bam samtools genome sam index written 4 months ago by nhung0 • updated 4 months ago by Jennifer Hillman Jackson25k

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