User: lhp_sf4dem

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lhp_sf4dem30
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3 months ago
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7 months ago
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l*********@sbcglobal.net

Posts by lhp_sf4dem

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/mnt/galaxy/tmp folder contains huge "url_pasted..." files which I can't delete
... We've been running a private GVL/Galaxy instance for a number of weeks with 2-3 users. All was well until recently. We have set up 1.5 TB elastic block storage to service our galaxy instance, and we recently noticed it contains 0.6 TB of data, despite the fact that we've confirmed that everyone ha ...
gvl cloudman delete admin logs written 4 months ago by lhp_sf4dem30 • updated 4 months ago by Enis Afgan690
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Comment: C: Private vs Public Galaxy: different outcomes following Fastq upload
... I should have been more specific... We gave "GVL" at try and it seems to have some hangups right out of the box... ...
written 4 months ago by lhp_sf4dem30
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Answer: A: Private vs Public Galaxy: different outcomes following Fastq upload
... I gave this a try and was initially impressed by the interface and excited to use the latest release of Galaxy; however, after getting it set up, I immediately encountered an error "right out of the box". The Cluster info log is reporting over and over the following error: R_COMM channel basic get ...
written 4 months ago by lhp_sf4dem30
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Answer: A: Private vs Public Galaxy: different outcomes following Fastq upload
... That worked! I have a smallish fastq.gz file that I've successfully uploaded and analyzed in the past via the Main Galaxy instance at usegalaxy.org. Using this file as a test subject, I uploaded it to our private Cloudman Galaxy instance, setting the file type to "fastqsanger" in the upload tool i ...
written 5 months ago by lhp_sf4dem30
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Comment: A: Private vs Public Galaxy: different outcomes following Fastq upload
... Thanks for the response! I **just** discovered the fastqGroomer tool, and that works like a charm. Still, when using the public Galaxy tools @ usegalaxy.org, I don't normally need to do this. So, to answer your questions: 1. We download files from our Illumina BaseSpace account. Those files ...
written 5 months ago by lhp_sf4dem30
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Private vs Public Galaxy: different outcomes following Fastq upload
... We are experimenting with setting up our own cloud-based Galaxy server using the Cloudman tools and a 1 year grant of AWS credits we received recently. We've managed to stand up the server and are doing some testing. In the past, when we upload fastq data derived from Illumina sequencing runs to t ...
galaxy upload fastq written 5 months ago by lhp_sf4dem30
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Comment: C: Problems with Trinity and Unicycler
... Never mind! My process is running! Great news! ...
written 7 months ago by lhp_sf4dem30
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Comment: C: Problems with Trinity and Unicycler
... Any status updates as of 01/18, 8 a.m. PST? Have the problems been resolved? Thanks! --Lee ...
written 7 months ago by lhp_sf4dem30
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Comment: C: Problems with Trinity and Unicycler
... Any status updates as of 01/18, 8 a.m. PST? Have the problems been resolved? Thanks! --Lee ...
written 7 months ago by lhp_sf4dem30

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