User: dw2p

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dw2p0
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Posts by dw2p

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Answer: A: Converting transcript data from Salmon to gene level TPM
... Thank you. Seems I had a couple of problems there - first off, I was using a gene to transcript mapping file with too much information (too many columns). I trimmed this down to two columns: the transcript id (#mm10.knownGene.name) and the official gene symbol (mm10.kgXref.geneSymbol), and that pa ...
written 6 months ago by dw2p0
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Converting transcript data from Salmon to gene level TPM
... I have got TPM data from running Salmon on RNA-seq data. However, this is TPM for each individual transcript (often multiple different ones per gene). I want to collapse multiple transcripts to single genes before running DESeq2. Is there a way to do this in Galaxy? Preferably, a simple way for some ...
rna-seq deseq2 galaxy salmon tpm written 6 months ago by dw2p0

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