User: eennadi

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eennadi0
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Posts by eennadi

<prev • 4 results • page 1 of 1 • next >
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Answer: A: How to install program on Galaxy
... Yes it helped but can i get my data from genomespace into them? I have my data in genomespace and google drive this is to save internet data that is scarce. Anyway to get in data? ...
written 16 days ago by eennadi0
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How to install program on Galaxy
... Hi, I use https://usegalaxy.org, but i want to install spades, its available in the toolshed but how can i get it into my instance? ...
assembly written 16 days ago by eennadi0
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(Closed) Help with GATK protocol
... I wish to call variant using the GATK workflow. However, I am having problems 1. Indel re-aligner. I am confused with this step "Restrict realignment to provided intervals". How do I get the GATK intervals I downloaded dbSNP from NCBI database in VCF format but 2. Realigner Target Creator for use ...
deprecated gatk software error tool variant written 7 months ago by eennadi0 • updated 7 months ago by Jennifer Hillman Jackson25k
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How can I index a file with tabix?
... I used freeBayes to call variants. Running it on the program I wanted to use it for it returned this [W::vcf_parse] Contig 'cneoH99_Chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'cneoH99_Chr9' is not defined in the header. (Quick workaround: ...
freebayes galaxy gatk vcf variant written 8 months ago by eennadi0 • updated 8 months ago by Jennifer Hillman Jackson25k

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