Moderator: carlfeberhard

gravatar for carlfeberhard
carlfeberhard390
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390
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United States
Last seen:
2 years ago
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4 years, 6 months ago
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Posts by carlfeberhard

<prev • 51 results • page 1 of 6 • next >
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Answer: A: Custom JavaScript file in Galaxy
... That way will load via a script tag with a cache buster. It'll have access to all the globals we currently use (requirejs, jquery, backbone, etc.) and most of the app is decorated onto the global object Galaxy. Although not entirely ideal, that spot is as good a place as any currently. Is there so ...
written 2.2 years ago by carlfeberhard390
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Answer: A: absolute path of Galaxy folder in template mako file in visualisation plugin
... Your code is getting the URL root. It sounds like you're looking for the file system directory for galaxy. This should work as far as I know: ## within the mako file... <% import os galaxy_dir = os.getcwd() %> var galaxyDir = "${galaxy_dir}"; ...
written 2.2 years ago by carlfeberhard390
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Answer: A: Network visualisation of json or gml networkx
... Hi, jasperkoehorst No - GML is not supported as a) GML isn't a datatype included with Galaxy, and b) GraphVis (and more specifically cytoscapejs) would need to know how to parse it. I haven't been able to find anything on cytoscapejs supporting GML yet - let me know if you find it as that would mak ...
written 2.3 years ago by carlfeberhard390
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Answer: A: Share History - Error
... Hi, aries re: the history import: I believe what happened was a usability error on our side, i.e. bad/no feedback. When your students began copying your history they would have seen a dialog box telling them that the history was being imported. It seems likely that they may have closed the dialog ...
written 2.3 years ago by carlfeberhard390
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Answer: A: Galaxy job taking bit too long for uploading and processing datasets
... Thanks for the information, j.zhang-41. This may be due to load on the main Galaxy site then. When the data type of a dataset is changed, metadata for the file is recomputed. This often is done through one of the cluster job queues. Currently the mainGalaxy cluster is working through a significant ...
written 2.4 years ago by carlfeberhard390
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Comment: C: Galaxy job taking bit too long for uploading and processing datasets
... Hello, j.zhang-41: If you use the refresh the page, do the history datasets change state? Have they run? Or do they remain in the running state regardless of the page refresh? ...
written 2.4 years ago by carlfeberhard390
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Answer: A: Galaxy Code (/static/scripts/) that is not minified
... They can still be found here: `/static/src` ...
written 2.5 years ago by carlfeberhard390
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Comment: C: Transferring histories between galaxy instances using URLs
... That last part isn't part of it, no. It's a separate bug. Ok - 16.01 is what I've tested on here and should be alright. What do the logs say for that instance around the time you tried importing to it? ...
written 2.6 years ago by carlfeberhard390
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Comment: C: Transferring histories between galaxy instances using URLs
... Did that help? If not, we can diagnose more. ...
written 2.6 years ago by carlfeberhard390
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Comment: C: where to write Controller class in Galaxy Visualisation plugin
... Hi, sureshhewabi The "http://localhost:8080/api/datasets/da25dcb15a682136?data_type=raw_data&provider=xml&selector=SpectrumIdentificationItem" was an example. I was hoping that you would replace the dataset id "da25dcb15a682136" with your own and "SpectrumIdentificationItem" with one of the ...
written 2.6 years ago by carlfeberhard390

Latest awards to carlfeberhard

Teacher 2.2 years ago, created an answer with at least 3 up-votes. For A: absolute path of Galaxy folder in template mako file in visualisation plugin
Scholar 2.5 years ago, created an answer that has been accepted. For A: Visualize gff3 file
Scholar 3.3 years ago, created an answer that has been accepted. For A: Visualize gff3 file
Teacher 3.6 years ago, created an answer with at least 3 up-votes. For A: Visualize gff3 file
Scholar 4.3 years ago, created an answer that has been accepted. For A: Visualize gff3 file
Teacher 4.3 years ago, created an answer with at least 3 up-votes. For A: Visualize gff3 file

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