User: bensellak

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bensellak0
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Posts by bensellak

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Answer: A: Invoking galaxy workflows via API and providing fastq as input file
... Going through the galaxy's API is the hard way. You can use existing python libraries such Bioblend. You can connect to your galaxy instance by API key, first upload your files just by calling the upload tool, then the rest is quite the same. Prepare you inputs for each tool an run it. It will be be ...
written 3 months ago by bensellak0
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Comment: C: Can I submit the next step when this step is still processing (yellow)
... If you have already executed your analysis steps (A history). You can build a workflow from this one and then just run it with your new inputs. Each step needing an input should wait for it. ...
written 3 months ago by bensellak0

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