User: jasonanthonywhite

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New User
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Last seen:
8 months ago
Joined:
9 months, 3 weeks ago
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j****************@gmail.com

Posts by jasonanthonywhite

<prev • 4 results • page 1 of 1 • next >
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Running MACS2 without a control sample
... While going through the [Analysis of Chip-Seq][1] data tutorial, I realized that one of my input controls has significantly less sequencing coverage (fingerprint plot link - https://imgur.com/a/y8yXo) than its experimental counterpart. The control sample has 1/4 the mapped reads of the treated samp ...
chip-seq macs2 control written 8 months ago by jasonanthonywhite20 • updated 8 months ago by Jennifer Hillman Jackson25k
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(Closed) ChIP-Seq: MACS2 refinepeak
... Happy New Year Everyone!! I am reaching out to inquire about the use of the MACS2 refinepeak package. Looking through the Galaxy website and the MACS github, I have only been able to find this description, "It is an experimental utility that takes raw read alignments, refines peak summits and gives ...
chip-seq macs2 spp refinepeak written 9 months ago by jasonanthonywhite20
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Answer: A: ChIP-Seq: Galaxy to IGB Visualization
... Found the problem. I did not realize that the UCSC genomes were in the database/build drop down menu using different nomenclature than the other assembly sources. I was only looking for genomes that started with "homo sapien" but searching for hg19 or hg38 render additional options. Associating file ...
written 9 months ago by jasonanthonywhite20
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ChIP-Seq: Galaxy to IGB Visualization
... Hi All, When trying to view Galaxy generated BAM files (from MACS and/or Star) in IGB, it seems that the database/build associated with the BAM files (hg19 with mtDNA replaced with rCRS) is not recognized by IGB, so the BAM files load in to IGB showing custom genome as oppose to the one identified ...
chip-seq genome reference ibg galaxy written 9 months ago by jasonanthonywhite20

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