User: Mickael Di

gravatar for Mickael Di
Mickael Di30
Reputation:
30
Status:
New User
Location:
Belgium
Last seen:
1 month ago
Joined:
1 month, 1 week ago
Email:
m**********************@gmail.com

Posts by Mickael Di

<prev • 8 results • page 1 of 1 • next >
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Comment: A: Ensembl numbers to gene symbols
... Thanks for your answer Devon. CAn you tell me how can I set as "tabular" datatype in galaxy? I upload a text file and when I want to join the data I cannot select the text file the format was not recognize. ...
written 4 weeks ago by Mickael Di30
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Ensembl numbers to gene symbols
... Hello, I already aks in a post this question: I performed RNA Seq analysis using DeSeq2. At the end of the analysis it got differential expression of genes associated with Ensembl numbers. My GTF is annotated with Ensembl numbers. ENSMUSG00000026879 ENSMUSG00000026043 ENSMUSG00000092609 ENSMUSG0 ...
dataset tabular datatype metadata assign written 4 weeks ago by Mickael Di30 • updated 4 weeks ago by Jennifer Hillman Jackson23k
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Answer: A: Ensembl numbers to gene symbols
... Please another question: what should be the format of the tabular mapping file? .txt does not work so .gtf, .other format? What tool can I use to convert my .txt fie into .other format in galaxy? Thanks for your answers. Mickael ...
written 4 weeks ago by Mickael Di30
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Answer: A: Ensembl numbers to gene symbols
... Please another question: what should be the format of the tabular mapping file? .txt does not work so .gtf, .other format? What tool can I use to convert my .txt fie into .other format in galaxy? Thanks for your answers. Mickael ...
written 4 weeks ago by Mickael Di30
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Answer: A: Ensembl numbers to gene symbols
... Thanks for your answer. It is really helfull. Best regards Mickael ...
written 4 weeks ago by Mickael Di30
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Ensembl numbers to gene symbols
... Hello, I performed RNA Seq analysis using DeSeq2. At the end of the analysis it got differential expression of genes associated with Ensembl numbers. My GTF is annotated with Ensembl numbers. ENSMUSG00000026879 ENSMUSG00000026043 ENSMUSG00000092609 ENSMUSG00000018830 ... I am wondering: how can ...
rna-seq gene reference gtf ensembl written 4 weeks ago by Mickael Di30
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Comment: A: Error with Cufflinks in Galaxy
... Thanks for your answer Jennifer. I am waiting for your feedback. This error appears and I can read there is an error with this data. I can open the datafile and is my GTF. Do you think my GTF is wrong? In my GTF the chromosomes loci are annoted as 1:3905738-3986215 for example and not chrs1:390573 ...
written 5 weeks ago by Mickael Di30
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Tool failure that reports: AttributeError: 'module' object has no attribute 'ICM'
... Hi, I want to run Tuxedo2 workflow associating cufflinks with a gtf annotation file. TopHat seems to be OK but after I get this error with cufflinks: Fatal error: Matched on ERROR ERROR:galaxy.datatypes.registry:Error calling method ICM from class Traceback (most recent call last): File "/cv ...
usegalaxy.org galaxy 17.09 bug error written 5 weeks ago by Mickael Di30 • updated 5 weeks ago by ellascottgm0

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