Moderator: Jeremy Goecks

gravatar for Jeremy Goecks
Reputation:
50
Status:
Trusted
Location:
United States
Last seen:
1 day, 12 hours ago
Joined:
3 years, 8 months ago
Email:
j******@gwu.edu

Posts by Jeremy Goecks

<prev • 8 results • page 1 of 1 • next >
0
votes
7
answers
286
views
7
answers
Answer: A: Import history from file not working - error
... Great to hear that you solved your problem. If you're willing, it would be nice to post the ultimate problem and your solution so that others can learn from your experiences. Thanks! ...
written 4 months ago by Jeremy Goecks50
0
votes
7
answers
286
views
7
answers
Answer: A: Import history from file not working - error
... This is tough because I can't reproduce the behavior that you're seeing. My next suggestion is to look at the temp directory where the unpacked history should be, which in this case is `/var/galaxydata/database/tmp/tmpE4QC2N/` Do you see what's expected in this directory, including `history_attrs. ...
written 4 months ago by Jeremy Goecks50
0
votes
7
answers
286
views
7
answers
Answer: A: Import history from file not working - error
... Hi Maria, I was able to import this history using the latest Galaxy release, so it appears that this is not a compatibility issue b/t your versions of Galaxy. One thing to check: histories much be accessible by link or published so that they are visible to the Galaxy server that you're importing th ...
written 4 months ago by Jeremy Goecks50
1
vote
7
answers
286
views
7
answers
Answer: A: Import history from file not working - error
... The job of *galaxy.tools.imp_exp.JobImportHistoryArchiveWrapper( self.app, self.job_id ).cleanup_after_job()* is to create the history and import the history's datasets. It appears that the problem is that the function cannot find the datasets. Can you share a link to the history archive that is cau ...
written 4 months ago by Jeremy Goecks50
1
vote
2
answers
660
views
2
answers
Answer: A: Can Trackster be used stand-alone?
... As usual, Jen is spot-on in her reply. We definitely want to make Trackster stand-alone, but it's not there yet. Here's a card that outlines what needs to be done: https://trello.com/c/UWdri0vD This a long-term project that I expect will take 6-12 months. If you are interested in helping, please add ...
written 3.2 years ago by Jeremy Goecks50
0
votes
2
answers
669
views
2
answers
Answer: A: Trackster Error
... Hi Suzanne, Thanks for sharing your history. This is a file format issue on our side. We’ll get it taken care of and let you know when it’s fixed. Thanks, J. -- Jeremy Goecks Assistant Professor of Computational Biology George Washington University ...
written 3.7 years ago by Jeremy Goecks50
0
votes
2
answers
669
views
2
answers
Answer: A: Trackster Error
... Hi Suzanne, Can you share your history with me and I’ll take a look? Thanks, J. -- Jeremy Goecks Assistant Professor of Computational Biology George Washington University ...
written 3.7 years ago by Jeremy Goecks50
0
votes
1
answer
1.7k
views
1
answers
Comment: C: Exome Seq Work Flow
... Here’s a simple exome analysis pipeline using VarScan for variant calling and ANNOVAR for annotation: https://usegalaxy.org/u/jeremy/w/exome-analysis You may want to tweak some aspects of it, such as using FreeBayes rather than VarScan and/or using a different set of annotations from ANNOVAR. Bes ...
written 3.7 years ago by Jeremy Goecks50

Latest awards to Jeremy Goecks

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 104 users visited in the last hour