User: annet.kyomuhangi

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Last seen:
9 months, 3 weeks ago
Joined:
10 months, 2 weeks ago
Email:
a***************@uky.edu

Posts by annet.kyomuhangi

<prev • 7 results • page 1 of 1 • next >
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FreeBayes returning an empty table
... Hi there, If I provide Freebayes with quality scores it gives me an empty table. If I don't provide the quality scores it returns a full table. What could be wrong? Thank you ...
freebayes bam vcf variant galaxy written 9 months ago by annet.kyomuhangi10 • updated 9 months ago by Jennifer Hillman Jackson25k
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Comment: C: VCF filter filters everything; best forum for questions
... Hey Jennifer, How do you convert the QUAL score produced by freebayes to a PHRED score? Thank you ...
written 10 months ago by annet.kyomuhangi10
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Comment: C: Fatal error :Exit code 1
... I tried to sort my inputs but the error is still there. I am doing variant detection, which other tools can I use besides Picard? I used BWA for mapping and it worked without any errors. Thanks! ...
written 10 months ago by annet.kyomuhangi10
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Fatal error :Exit code 1
... Am getting the error below with "NSG: Picard:" and am using the tool "fixmate information". What does the error mean and how can i fix it? Thank you! Fatal error: Exit code 1 () Picked up _JAVA_OPTIONS: -Djava.io.tmpdir=/galaxy-repl/main/jobdir/017/883/17883491/_job_tmp -Xmx7g -Xms256m Exception ...
galaxy written 10 months ago by annet.kyomuhangi10 • updated 10 months ago by Jennifer Hillman Jackson25k
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Starting up a new Galaxy Cloudman instance at AWS
... I want to launch amazon cloud but cant find the "cloud" button on the main galaxy server. How can I Launch cloud? Thanks ...
cloudman galaxy cloud cloudlaunch written 10 months ago by annet.kyomuhangi10 • updated 10 months ago by Jennifer Hillman Jackson25k
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Matched error with cuffdiff
... Am new to genomic data analysis. Am using galaxy main to analyze RNA-Seq data but Cuffdiff is giving me the following error. Can someone explain what all this means and how to go about it. Thanks Fatal error: Matched on error [18:58:46] Loading reference annotation. [18:58:47] Inspectin ...
cuffdiff hisat2 galaxy rna-seq error written 10 months ago by annet.kyomuhangi10 • updated 10 months ago by Jennifer Hillman Jackson25k
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Galaxy is taking forever to run my submissions
... I am analyzing RNA seq data and HISAT2 is taking forever to run. Someone explain why. Thanks Annet ...
galaxy written 10 months ago by annet.kyomuhangi10 • updated 10 months ago by Jennifer Hillman Jackson25k

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