User: galaxyNewbie

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galaxyNewbie40
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Posts by galaxyNewbie

<prev • 22 results • page 1 of 3 • next >
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hgvs_vcf input format?
... For the HGVS_VCF package it appears the input format is simply a tabular file. I uploaded a .txt file with validated HGVS formatted entries. Could anyone provide information about the input formatting to the HGVS_VCF galaxy package? Are there any galaxy package alternatives which would convert h ...
vcf hgvs galaxy written 7 weeks ago by galaxyNewbie40 • updated 7 weeks ago by Jennifer Hillman Jackson25k
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Comment: C: import data from filesystem into the library without copying it
... RESOLVED... 1). Added myself to the approved role 2). Modified "user_library_import_dir = xxx" in the configuration file. ...
written 8 weeks ago by galaxyNewbie40
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(Closed) import data from filesystem into the library without copying it
... Under Admin I created a linked dataset for file > 2GB. The Galaxy message says "This job is running" but I do not see any linked dataset in my current histories tab. Am I supposed to be able to view the linked dataset (link instead of copying) from my local galaxy histories? FYI...I have a ...
link instead of copying written 8 weeks ago by galaxyNewbie40
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best galaxy app for viewing plink .bed files
... Hello, What is the best galaxy package to view a plink .bed file? Since it is a binary file I know the contents cannot be viewed directly, but I was wondering whether there is a galaxy package for viewing the binary file. Thank you. ...
galaxy plink written 9 weeks ago by galaxyNewbie40 • updated 9 weeks ago by Jennifer Hillman Jackson25k
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Comment: C: Link to dataset (rather than copying)
... Thank you for your quick reply! I found the options under admin...Data Libraries. But I may still have some configuration questions. ...
written 9 weeks ago by galaxyNewbie40
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Admin: Link to dataset inside Data Library rather than copying or importing
... According to the Data Libraries documentation you can link to datasets as opposed to importing them. through a copy. I have a local galaxy installation. My primary goal is to not be required to import, since I have a datasets > 2GB. I am an admin., but do not see any "add datasets to curr ...
dataset copy libraries galaxy link written 9 weeks ago by galaxyNewbie40 • updated 9 weeks ago by Jennifer Hillman Jackson25k
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Installation of new tools gets stuck on "cloning"
... Installation of new tools does not proceed past "cloning." I'm using galaxy version 18.09. There is no entry for this when I select "view error log." Thank you. ...
18.09 galaxy local install admin written 9 weeks ago by galaxyNewbie40 • updated 9 weeks ago by Jennifer Hillman Jackson25k
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administrator e-mail designation through galaxy.yml.sample
... Hello. I just re-installed galaxy after purchasing a new laptop. As I have done in the past I added my e-mail address in the admin_user section of the config file. However, it appears this time the config file = galaxy.yml.sample. Last time the config file = galaxy.ini, I believe. After adding ...
config admin written 9 weeks ago by galaxyNewbie40 • updated 9 weeks ago by Martin Čech ♦♦ 4.8k
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"Upload" of files > 2GB into Galaxy
... I have a local instance of Galaxy installed and would like to use .bam files > 2GB in samtools and other galaxy packages. Without having to FTP them into Galaxy, is there a way to simply provide a link inside galaxy to these >2 GB files? Thank you. ...
galaxy upload written 11 weeks ago by galaxyNewbie40 • updated 10 weeks ago by Hotz, Hans-Rudolf1.8k
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Comment: C: Installation of new tools from tool shed via admin - not working
... Thanks for your quick reply. I installed using "git clone -b release_18.05 https://github.com/galaxyproject/galaxy.git" . I'm on the Ubuntu version 18.04. I also tried to install several other packages and they all are "stuck" on cloning. I researched other "stuck on cloning" posts and they al ...
written 12 weeks ago by galaxyNewbie40

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