User: misshapp

gravatar for misshapp
misshapp10
Reputation:
10
Status:
New User
Location:
University of Nebraska - Lincoln
Website:
https://www.linkedin.c...
Twitter:
_misshapp
Last seen:
8 months, 3 weeks ago
Joined:
11 months ago
Email:
m********@gmail.com

Posts by misshapp

<prev • 4 results • page 1 of 1 • next >
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Comment: C: Galaxy deleting bcftools_stats pdf output?
... Will do! Thank you! ...
written 10 months ago by misshapp10
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Galaxy deleting bcftools_stats pdf output?
... Hi guys - I'm running a local instance of galaxy (17.09) and using bcftools_stats to create some summary statistics on multiple vcf files. This results in a text file with the info that is automatically plotted using "plot-vcfstats" to create a pdf with summary charts/graphs. The job runs successf ...
bcftools pdf written 10 months ago by misshapp10 • updated 10 months ago by Jennifer Hillman Jackson25k
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Comment: C: Genotype Concordance - bcftools - stats?
... Hi Jen - Yes, I am using local galaxy version 17.09, installed using git. I have installed samtools 1.2 - which didn't resolve the issue. I also backed up to the January 2017 version of bcftools_stats, after uninstalling the latest version, which resulted in the same error: Fatal error: Exit code ...
written 11 months ago by misshapp10
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Genotype Concordance - bcftools - stats?
... I've been trying to find a tool in galaxy that works for calculating genotype concordance between vcf files. Recently I came across bcftools - stats, which seems to have what I need. However, when I try to run it I get an error saying " bgzip: command not found ". I've checked the tool installation ...
bcftools concordance genotyping written 11 months ago by misshapp10 • updated 11 months ago by Jennifer Hillman Jackson25k

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