User: hmb106

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hmb10610
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Posts by hmb106

<prev • 3 results • page 1 of 1 • next >
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Answer: A: Loading human genome hg38 reference sequence- completely stuck
... Jen or anyone else, I tested the instructions above to load hg38 (new install) and got through the two-bit indexes on my laptop (OS 10.10.5 with python 2.7.10). I'm now hung up on generating the Bowtie indexes. How long should it take and do I need samtools installed to accomplish this? It just ha ...
written 24 days ago by hmb10610
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Answer: A: Loading human genome hg38 reference sequence- completely stuck
... Thanks for the prompt and detailed answer. I will give this a try today with a clean install as I bet the DBKey duplicates maybe the issue. Unfortunately, I don't have the bandwidth/access here to properly utilize Cloudman instance for the amount of data I am analyzing (250GB of transcriptome FASTQ ...
written 26 days ago by hmb10610
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Loading human genome hg38 reference sequence- completely stuck
... I am running a local version of galaxy (17.09) trying to analyze RNA seq data with Bowtie2, DEseq2. I am the admin and have gotten this instance mostly configured. I have managed to get all the sequences loaded in to the Data libraries off my hard drive as I haven't had time to set up a FTP server. ...
hg38 bowtie ref genome rna-seq written 27 days ago by hmb10610

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