User: d.hand

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d.hand0
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Posts by d.hand

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Comment: C: Kraken run time
... So i modified job_conf.xml, but I don't think this is the problem. With "squeue" I get: JOBID PARTITION NAME USER ST TIME NODES NODELIST(REASON) 11 main g464_kra galaxy R 49:46 1 w1 And a r3.8xlarge worker node is started, but i think ...
written 26 days ago by d.hand0
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Comment: A: Kraken run time
... Hi thanks for the response, actually i still have a job running now for 24 hours! I have set the master to not do any jobs. So the job is running on one r3.8xlarge, I'm not sure How I can get much larger than this! ...
written 27 days ago by d.hand0
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Kraken run time
... I have been running 0.2-2M 150 bp kraken jobs on the bacterial database on a private cloudman cluster with one c3.large master node (set to not do jobs) and 0-10 r3.8xlarge worker nodes (32 cores, 244 gb memory). The problem is that the jobs are taking between 6-13+ hours with the bacterial databas ...
kraken written 27 days ago by d.hand0

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