User: matteoaccetturo

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Posts by matteoaccetturo

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Comment: C: Filter BAM dataset by CIGAR string "D" (deletion)
... Sorry I answered, instead of using the reply button. Here is my comment: Thanks Jen, now I get mapped reads, but it seems that the CIGAR filter does not work as I also put 1D to filter on CIGAR string, and I got everything. Here below the parameters I used: Input Parameter Value Note for rerun BAM d ...
written 4 weeks ago by matteoaccetturo0
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Filter BAM dataset by CIGAR string "D" (deletion)
... Hello everyone, I would like to select all reads from a BAM dataset with one deletion, two deletion and so on. I thought to use the CIGAR string putting 1D, 2D and so on depending on the case but when I use the Filter BAM datasets on a variety of attributes tool, I get only those reads with 0 bases ...
bam filter galaxy sam deletions written 4 weeks ago by matteoaccetturo0

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