User: eculfa

gravatar for eculfa
eculfa10
Reputation:
10
Status:
New User
Location:
Turkey/Istanbul/Üsküdar American Academy
Last seen:
5 months, 2 weeks ago
Joined:
1 year ago
Email:
e*****@my.uaa.k12.tr

Biology teacher at Uskudar American Academy.

Posts by eculfa

<prev • 3 results • page 1 of 1 • next >
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cummerbund tool error
... Hello, I recently tried differential gene expression analysis using an established workflow. I had miRNA data of two conditions, single replicate. I fed my fastqsanger data and the reference genome I called from UCSC, into the workflow. Galaxy did generate a Cuffdiff SQlite database but when I use ...
workflows galaxy cufflinks rna-seq written 6 months ago by eculfa10 • updated 6 months ago by Jennifer Hillman Jackson25k
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Answer: A: SQLite file from Galaxy gives "0 obs."
... hi! I have followed the instructions that you gave but it still wouldn't work. In the meantime, I have googled to see if others had experienced similar problems to find there doesn't seem to be a step by step troubleshooting of the problem. Later on, I tried to get my figures in galaxy but it was to ...
written 11 months ago by eculfa10
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SQLite file from Galaxy gives "0 obs."
... Hello! After I have performed Cuffdiff in Galaxy on my two RNA-Seq data of different treatment conditions, I loaded my SQLite data into RStudio to see the differentially expressed genes. However, after I command; "gene_diff_data <- diffData(genes(cuff_data))" I don't see any data available in R. ...
R sqlite rna-seq written 12 months ago by eculfa10

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