User: skhil083

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skhil0830
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Posts by skhil083

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Comment: C: multibamsummary vs multibigwigsummary
... So what is the biological translation of that greater average signal, if we are to assume the experiment was done well. Would it be greater transcription factor binding per se? ...
written 5 weeks ago by skhil0830
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Comment: C: multibamsummary vs multibigwigsummary
... My bigwig files were created with bedgraphtoBigwig following stretching with slopBed. Would that still be appropriate to use for multibigwigsummary? Since the scale of multibigwigsummary corresponds to average read scores calculated, would higher scores theoretically correspond to peaks with greater ...
written 5 weeks ago by skhil0830
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multibamsummary vs multibigwigsummary
... I am in the process of comparing the similarity between two ChIP-seq conditions. According to the Deeptools documents, multibamsummary computes the read coverages for genomic regions for typically two or more BAM files whereas multibigwigsummary computes the average scores for each of the files in e ...
chip-seq galaxy written 5 weeks ago by skhil0830 • updated 5 weeks ago by Devon Ryan1.8k

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