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Posts by npetr
Comment: A: filtering pair-end bam file
... Hey, thank you very much for your reply Jen, so do you mean this filtering result in Pair End bam file containing only pairs where read 1 is mapped to forward strand? best Natalia ...
... Hello, I am trying to filter a pairend bam file to get only forward reads in Galaxy. A bam filter from bamtools does not seem do exactly what I mean, in fact it seems that it filters both read 1 and read 2 but I would like to only have read 1 filtered in order to obtain only fragments mapped to for ...
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