User: bioadept

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bioadept0
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Posts by bioadept

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Comment: C: Mouse mm10 genome
... I didnot find mm10 Fasta format in data library. Could you specify, How can I add ref.genomes to the history panel (similar to adding .gtf files from galaxy library)? ...
written 25 days ago by bioadept0
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Comment: A: How to upload Mouse reference genome mm10, in Fasta format to My Galaxy History
... Are any of these files the correct fasta files to be used as reference Genome for RNA-seq analysis ? for the tuxedo pipeline mentioned in the above comment (Check image in link) (https://ibb.co/cYrgk6) ? Gencode genome fasta file ? ftp://ftp.sanger.ac.uk/pub/gencode/Gencode_mouse/release_M15/GRCm38 ...
written 25 days ago by bioadept0
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How to upload Mouse reference genome mm10, in Fasta format to My Galaxy History
... I tried to use an imported "tuxedo protocol" RNA-seq pipeline from public workflows. I found mouse .gtf annotation file either from Galaxy Data Library & UCSC Main table browser. But, I could not find the mouse Reference Genome (FASTA) in the Galaxy Data Library ? Could you tell me how to find ...
hg38 reference-genome galaxy mm10 written 25 days ago by bioadept0 • updated 23 days ago by Jennifer Hillman Jackson23k
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Comment: A: ImportingTuxedo pipeline: Uncaught exception in exposed API method:
... I am new to this community. Sorry, I can see same issues have been posted already. If you know new pipelines for running RNA-seq differential expression you can inform me. ...
written 25 days ago by bioadept0
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ImportingTuxedo pipeline: Uncaught exception in exposed API method:
... I tried to follow a tutorial, I have problem running the Imported tuxedo workflow (I get error after 10:25 of the video link) https://www.youtube.com/watch?v=6kEX1_17raY&list=PLV0ljlEorQSCisf0Nl1MGwSPxOmi9a1HN I uploaded the datasets vis NCBI-SRA Tools as FASTQ (uncompressed). I have used onl ...
learn usegalaxy.org rna-seq written 25 days ago by bioadept0 • updated 23 days ago by Jennifer Hillman Jackson23k

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