User: yelekley7

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yelekley70
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Posts by yelekley7

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error message when running Deseq2 on featureCounts output files
... I get the following error message when running Deseq2 on two samples (tumor and normal) that was processed with STAR then with FeatureCounts. Please suggest how to correct the error. Fatal error: An undefined error occurred, please check your input carefully and contact your administrator. ...
rna-seq written 6 weeks ago by yelekley70
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Imported Cufflinks assembled transcripts files not recognized by cuffmerge
... Hello, I've imported two assembled transcript .gtf files from previous Cufflinks analysis into Galaxy. When I try to run Cuffmerge I get a message that no additional Cufflinks output is available. How do I merge these two files? Thanks ...
datatype genome metadata rna-seq written 6 weeks ago by yelekley70 • updated 6 weeks ago by Jennifer Hillman Jackson25k
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RNA-STAR Two Pass mode
... Hello, I would like to call variants in RNA-seq transcriptome. Is it possible to run RNA-STAR in two-pass mode? If so, how? Thanks ...
rna-seq rna-star star written 9 weeks ago by yelekley70 • updated 9 weeks ago by Jennifer Hillman Jackson25k
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Comment: C: Star-Fusion last-matching gene pairs file
... Thanks Jennifer, The same files processed successfully with STAR-RNA, therefore, it must the be memory allocation issue. Please let me know when the decision is made to add more memory. I need to know if I should look for another way to process the files. Thanks again. ...
written 3 months ago by yelekley70
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Comment: C: Star-Fusion last-matching gene pairs file
... I keep getting an error: "This job was terminated because it used more memory than it was allocated". Is there anything I can do? Thank you very much for your help. ...
written 3 months ago by yelekley70
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Star-Fusion last-matching gene pairs file
... Hello, Could you please clarify the correct file to use as a last-matching gene pairs file for Star-Fusion. I ran human exome RNA-seq data through Star within Galaxy and would like to continue analysis with Star-Fusion. I'm looking for hg19 fusions but not sure which of the files 'plug-in-play' or ...
fusion input star rna-seq written 3 months ago by yelekley70 • updated 3 months ago by Jennifer Hillman Jackson25k

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