User: yelekley7

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yelekley70
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Posts by yelekley7

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RNA-STAR Two Pass mode
... Hello, I would like to call variants in RNA-seq transcriptome. Is it possible to run RNA-STAR in two-pass mode? If so, how? Thanks ...
rna-seq rna-star star written 13 days ago by yelekley70 • updated 13 days ago by Jennifer Hillman Jackson25k
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Comment: C: Star-Fusion last-matching gene pairs file
... Thanks Jennifer, The same files processed successfully with STAR-RNA, therefore, it must the be memory allocation issue. Please let me know when the decision is made to add more memory. I need to know if I should look for another way to process the files. Thanks again. ...
written 8 weeks ago by yelekley70
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Comment: C: Star-Fusion last-matching gene pairs file
... I keep getting an error: "This job was terminated because it used more memory than it was allocated". Is there anything I can do? Thank you very much for your help. ...
written 8 weeks ago by yelekley70
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Star-Fusion last-matching gene pairs file
... Hello, Could you please clarify the correct file to use as a last-matching gene pairs file for Star-Fusion. I ran human exome RNA-seq data through Star within Galaxy and would like to continue analysis with Star-Fusion. I'm looking for hg19 fusions but not sure which of the files 'plug-in-play' or ...
fusion input star rna-seq written 9 weeks ago by yelekley70 • updated 9 weeks ago by Jennifer Hillman Jackson25k

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