User: thomas.nigel.lawson

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Posts by thomas.nigel.lawson

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Comment: C: "Unable to finish job" when using discover_datasets in XML
... Great thanks. I had the same problem with using just the **from_work_dir** option as well technology == "dims" Again , I was always getting the error when I had any tsv file consisting of 1 row without column headers. Added column headers and it was fixed. ...
written 11 weeks ago by thomas.nigel.lawson10
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Download all history including data collection and nested data collections
... Hi all, I was wondering if anybody knows the easiest and quickest way of downloading the whole history with every result file from the history (including data collections)? When I use History options-->Export history to file On my local instance the data (e.g. results in .tsv) are not exported ...
xml galaxy history written 11 weeks ago by thomas.nigel.lawson10 • updated 11 weeks ago by jmchilton1.0k
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Answer: A: "Unable to finish job" when using discover_datasets in XML
... Found the solution to this. It seems one of the output files was causing some problems. The output file was a .tsv file with a single row of different Windows directories. I updated to give the file column headers and put the directories within apostrophes and it fixed it! After a bit more testi ...
written 11 weeks ago by thomas.nigel.lawson10
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"Unable to finish job" when using discover_datasets in XML
... I was wondering if you could help with a problem I was having using the discover_datasets option for getting dynamically named data output. It seems that it doesn’t work on our High Performance Compute but does on standard computers. Any ideas? The code I am using is this: technolog ...
xml galaxy discover_datasets written 11 weeks ago by thomas.nigel.lawson10

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Scholar 11 weeks ago, created an answer that has been accepted. For A: "Unable to finish job" when using discover_datasets in XML

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