User: zli80

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zli800
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Posts by zli80

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Comment: C: SAM-to-BAM (NGS: SAMtools)
... Sorry, I should be more specific with my question. I know the SAM file is build using the sacCer2 genome, but how do I select sacCer2 Genome on Galaxy's build in genome. Please take a look at the picture below. I selected built in genome but there isn't any reference genome available. Thanks https: ...
written 5 weeks ago by zli800
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Comment: C: SAM-to-BAM (NGS: SAMtools)
... Thanks for the tip Devon. So there isn't any built in genome in Galaxy for the SAM to BAM tool? ...
written 6 weeks ago by zli800
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Comment: C: SAM-to-BAM (NGS: SAMtools)
... Here are the first five line of the BAM file @HD VN:1.0 SO:coordinate @SQ SN:chrI LN:230208 UR:file:/nfs/srpipe_references/references/Saccharomyces_cerevisiae/S288c/all/fasta/S_cerevisiae_S288c.fa AS:S288c M5:d05f97502be63502b1dc28cba2e4d8f8 SP:Saccharomyces cerevisiae @SQ SN:chrII LN:813178 UR:fi ...
written 6 weeks ago by zli800
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SAM-to-BAM (NGS: SAMtools)
... I am trying to convert my SAM file to BAM file and I want to use the built in genome, but there is no available reference genome to use. I only have a SAM file from Saccharomyces cerevisiae. How do I load the reference genome?? -Thanks ...
samtools galaxy written 6 weeks ago by zli800 • updated 6 weeks ago by Devon Ryan1.8k

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