User: f.carlisle

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f.carlisle0
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Posts by f.carlisle

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Comment: C: DEXseq count reads tool obtaining only zero counts for all exons
... Hi Jen, Thanks for the suggestions. My analysis methods are identical, so it looks like a data mismatch may be the problem. ...
written 5 days ago by f.carlisle0
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DEXseq count reads tool obtaining only zero counts for all exons
... I'd like to run DEXseq on my RNA-seq dataset to identify any potential differences in exon inclusion between samples. I used HISAT2 to generate BAM files of aligned reads, and then DEXseq-Count mode-prepare to generate an annotation GFF file. My reference genome for alignments was hg38, and I used t ...
bam expression dexseq rna-seq differential written 6 days ago by f.carlisle0 • updated 6 days ago by Jennifer Hillman Jackson23k

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