User: marp.p

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marp.p20
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Posts by marp.p

<prev • 7 results • page 1 of 1 • next >
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Answer: A: CloudLaunch can't attach an instance to my volume after I increased the disk siz
... I'm sorry for the late answer, it was exactly my problem. I could fix the issue, so thank you so much! ...
written 7 months ago by marp.p20
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CloudLaunch can't attach an instance to my volume after I increased the disk size
... Hi, I'm working with a local Galaxy (v. 17.05) in EC2, managed by CloudLaunch. I increased the size of the disk (by clicking "Grow" in the CloudMan console) and the process seemed to go well, so once finished, I terminated the instance from CloudMan. However, when I tried to lunch a new instance I ...
galaxy cloudman aws cloud cloudlaunch written 8 months ago by marp.p20 • updated 7 months ago by Jennifer Hillman Jackson25k
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Comment: C: HTSeq-Count: Maximum alignment buffer size exceeded while pairing SAM alignments
... Thank you so much, solved! ...
written 8 months ago by marp.p20
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HTSeq-Count: Maximum alignment buffer size exceeded while pairing SAM alignments
... Hi I'm working on Cloudman doing RNASeq analysis. I am trying to use htseq-count tool for gene quantification, but I have this error: Fatal error: Unknown error occured 100000 GFF lines processed. 200000 GFF lines processed. [.....] 105500000 SAM alignment record pairs processed. Error occured whe ...
htseq_count bam galaxy sort rna-seq written 8 months ago by marp.p20 • updated 8 months ago by Jennifer Hillman Jackson25k
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Answer: A: Local Galaxy job delays: This job is waiting to run
... Update: All the jobs are running successfully now, after I simply launched an instance with more memory (m4.2xlarge instead of m4.xlarge). The "Error" is still present in the log file, but it seems to not affect the jobs! ...
written 8 months ago by marp.p20
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Comment: C: Local Galaxy job delays: This job is waiting to run
... Hi, thanks for your answer! I'm running my own instance of Galaxy on Amazon web Services EC2, managed by CloudMan (the most current release I can select is 17.05). I found that error message in the Galaxy log file in the CloudMan Admin panel. The jobs run successfully until two days ago, I hadn't s ...
written 8 months ago by marp.p20
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Local Galaxy job delays: This job is waiting to run
... Hi, I have been trying to run job(s) for all the day on Galaxy and they just hang with the "waiting to run" status. I did not have other jobs queued and form my admin log I found the error: Exception happened during processing of request from ('127.0.0.1', 46175) Traceback (most recent call ...
local galaxy jobs admin broken pipe written 8 months ago by marp.p20

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