User: k.makwana

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k.makwana20
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Posts by k.makwana

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Header on Deseq2 result files
... Thanks Jennifer, Really appreciate your help. ...
written 4 weeks ago by k.makwana20
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Answer: A: Header on Deseq2 result files
... Hello Jennifer, Thanks for your prompt reply. Just another naïve question, How can I revert back to the older version? ...
written 4 weeks ago by k.makwana20
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Header on Deseq2 result files
... I am using Deseq2 on galaxy for RNA-Seq data analysis. Earlier when I used to do differential expression using Deseq2, the header of the result files were according to the factor level names. Now the header says like "htseq-count on data 63 and data 62". Same way PCA graph as well denoting samples w ...
deseq2 rna-seq written 4 weeks ago by k.makwana20
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Deseq2 usage Galaxy
... Hello, I am trying to do some differential expression count on RNA Seq data using Galaxy. I did an alignment to reference genome and uploaded the files on the galaxy and did HTseq count and then Deseq2. My experiment set up is such that I have 6 duplicate samples for control and 6 duplicate for expe ...
2.11.40.1 deseq2 labels rna-seq output written 10 weeks ago by k.makwana20 • updated 9 weeks ago by Jennifer Hillman Jackson25k
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History at galaxy can not be seen
... Hello , I tried creating a new history without deleting previous one. Now I can not see my old history and any of its files. Though i can see still see that for my account I am using 43% of allocated memory space. ...
dataset active history account delete written 5 months ago by k.makwana20 • updated 5 months ago by Jennifer Hillman Jackson25k
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RNA STAR job error
... Hello, I am trying to RNA STAR aligner on pair end reads with inbuilt index but I am getting error: Transcriptome.cpp:51:Transcriptome: exiting because of INPUT FILE error: could not open input file /cvmfs data.galaxyproject.org/managed/rn. ...
hisat2 input rna-seq job error written 6 months ago by k.makwana20 • updated 6 months ago by Jennifer Hillman Jackson25k

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