User: stefanie.grunwald

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10
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New User
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Last seen:
2 weeks, 4 days ago
Joined:
2 months ago
Email:
s****************@charite.de

Posts by stefanie.grunwald

<prev • 4 results • page 1 of 1 • next >
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Answer: A: Error using stringtie - AttributeError: 'NoneType' object has no attribute"
... Hi, I could solve the problem for my data. I use now gtf version of the reference annotation file (instead of gff3) and set Minimum assembled transcript length to 50. What I also tried but it did not help: - filter out all lines in gff3 annotation file that misses "transcript_id" - grooming us ...
written 19 days ago by stefanie.grunwald10
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Error using stringtie - AttributeError: 'NoneType' object has no attribute"
... Hi, I have **RNA-seq data** and I am interested in whole gene expression results but also transcript expression, exon usage and long non coding RNA. The RNA-seq protocol is not optimized for circular and fusion RNA but I also want to look at that just in case I would find something giving me some id ...
stringtie rna-seq star assembly written 19 days ago by stefanie.grunwald10
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Answer: A: Disk quota exceed - history quota higher than expected
... Hi, yes, I do have two histories and my question only regards to history "Dataset". This history disk quota size is higher as I would expect. There are 12 *.fa.gz sequencing files - in total about 63GB. Additionally, I have annotation files (6 files) and reference genome files (3 files) with a tot ...
written 7 weeks ago by stefanie.grunwald10
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Disk quota exceed - history quota higher than expected
... Hi, my job was terminated because of disk quota exceeded. The history "dataset" shows 184GB but it should be around 65GB. I permanently deleted files but they are still shown (although as deleted) and I guess still account to the disk quote. Log out and log in did not help. Can you tell me what to d ...
disk quota written 7 weeks ago by stefanie.grunwald10

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