User: lachlan.simpson

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1 month ago
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l**************@petermac.org

Posts by lachlan.simpson

<prev • 17 results • page 1 of 2 • next >
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How to update the tool menu
... Sometimes I want to move tools around within the tool list/menu that appears in the left hand column of the galaxy main page. I understand that editing config/tool_conf.xml is where this can happen, and indeed it does affect the changes I make - but only on complete rebuild of the server. I'm find ...
tools ui written 5 weeks ago by lachlan.simpson20 • updated 4 weeks ago by Martin Čech ♦♦ 4.9k
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Comment: C: Installation TTW throws python error, remains in "cloning" stage
... Thanks Jen - I've already tried that (the other user is me). This was the result of searching the logs while trying to work out why suite_gops wasn't installing. ...
written 5 weeks ago by lachlan.simpson20
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Installation TTW throws python error, remains in "cloning" stage
... Galaxy 18.05 on CentOS 7.5 Some tools, when I try to install them through the web, will get stuck on one tool in the "cloning" state. In the galaxy/uwsgi.log I see this: 10.126.160.102 - - [11/Sep/2018:13:44:34 +1100] "POST /galaxy/admin_toolshed/install_repositories HTTP/1.1" 500 - "https: ...
18.05 errors tools installation written 5 weeks ago by lachlan.simpson20 • updated 5 weeks ago by Jennifer Hillman Jackson25k
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alignseq_seq.loc file missing
... Hi, I've got an error in my data tables page saying alignseq_seq.loc is missing. alignseq.loc and alignseq.loc.sample exist. Am I missing something or has there been an error in the naming of the file/calling of the file? I've seen this in both 17.09 and 18.05 ...
data tables twobit written 5 weeks ago by lachlan.simpson20 • updated 5 weeks ago by Jennifer Hillman Jackson25k
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Answer: A: rgrnastar is still cloning
... Failed to install through the web again. Jumping onto the command line I was able to install successfully via bioblend and ephemeris ...
written 6 weeks ago by lachlan.simpson20
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Answer: A: rgrnastar is still cloning
... Thanks. I'll do that now. ...
written 6 weeks ago by lachlan.simpson20
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Answer: A: rgrnastar is still cloning
... Actually, as I read the system requirements, I think I've made a terrible mistake. Does it require - for example, with hg19 - roughly 30GB to run or does it mean 57GB? > "Memory: To run efficiently, RNA-STAR requires enough free memory to > hold the SA-indexed reference genome in RAM. For Hum ...
written 6 weeks ago by lachlan.simpson20
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rgrnastar is still cloning
... I used the normal TTW method for installing new tools to install rgrnastar from iuc (d5659efd66aa) into Galaxy 18.05. I started this process yesterday afternoon, around 2 or 3. 18 hours later it still hasn't finished - I presume something has gone wrong. Which logs would indicate where the error i ...
software error rna-seq written 6 weeks ago by lachlan.simpson20
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Comment: A: 18.05 administration Charts: guerler or iuc
... Great - thanks. Just cleaning up our dev env I noticed that it hadn't installed properly and wanted to confirm I was replacing like with like. ...
written 4 months ago by lachlan.simpson20
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18.05 administration Charts: guerler or iuc
... Hi, in the [upgrade notes for 18.05][1] it states > The charts repository that powers Galaxy built-in visualizations that > need backend computation has been moved to the IUC account. In order > for these visualization options to keep working, admins need to > install the following repo ...
charts installation written 4 months ago by lachlan.simpson20

Latest awards to lachlan.simpson

Scholar 6 weeks ago, created an answer that has been accepted. For A: rgrnastar is still cloning

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