Admin: Martin Čech

gravatar for Martin Čech
Martin Čech ♦♦ 4.9k
Reputation:
4,870
Status:
Trusted
Location:
United States
Last seen:
19 hours ago
Joined:
4 years, 11 months ago
Email:
m*****@bx.psu.edu

Galaxy Team member

Posts by Martin Čech

<prev • 876 results • page 2 of 88 • next >
2
votes
4
answers
259
views
4
answers
Answer: A: Uploaded files still being imported ito the history after 48h
... Hi Flo, we were upgrading usegalaxy.org to a new release 2 days ago and one of the handlers ended up in a bad shape. Sadly your job got randomly assigned to it and that is why it took so long and then failed. Please import it again and it should be much faster. Importing files after FTP upload shoul ...
written 7 weeks ago by Martin Čech ♦♦ 4.9k
0
votes
1
answer
96
views
1
answers
Answer: A: How to update the tool menu
... The order of tool sections and the tools within the section is determined by the `integrated_tool_panel.xml` file. If you want to reorder it, change the order in that file. Changing the order anywhere else is not guaranteed to work (depends on the tool). ...
written 8 weeks ago by Martin Čech ♦♦ 4.9k
0
votes
1
answer
93
views
1
answers
Comment: C: The file is 1.6G
... Which server? What was the error? usegalaxy.org can easily handle files hundred times bigger. ...
written 9 weeks ago by Martin Čech ♦♦ 4.9k
0
votes
0
answers
146
views
0
answers
Comment: C: Local galaxy of release_18.05 is too slow
... If you are building frontend client yourself you need to run `make client-production`. Otherwise you will have non-compressed (large and slow) artifacts. That said there is no reason 1.9MB file should take 23s to load (especially locally). Is there a proxy or something that serves the static conten ...
written 9 weeks ago by Martin Čech ♦♦ 4.9k
1
vote
1
answer
132
views
1
answers
Comment: C: Importing Very Large NGS DataSets
... The majority of time you spent waiting when importing large datasets to Galaxy from a local filesystem is most probably during 'detecting metadata' step - when Galaxy is trying to reason about the data (count sequences etc.). This would go faster if you can get a faster machine to run the job. Besi ...
written 9 weeks ago by Martin Čech ♦♦ 4.9k
0
votes
0
answers
146
views
0
answers
Comment: C: Local galaxy of release_18.05 is too slow
... Can you please provide some metrics about what pages are slow and by how much? ...
written 10 weeks ago by Martin Čech ♦♦ 4.9k
1
vote
1
answer
134
views
1
answers
Comment: C: Galaxy running for too long
... Your limit on usegalaxy.org will most probably be your space quota (250GB by default). Galaxy can work with much bigger files but you have to provide the infrastructure. see https://galaxyproject.org/choices/ ...
written 10 weeks ago by Martin Čech ♦♦ 4.9k
1
vote
1
answer
134
views
1
answers
Answer: A: Galaxy running for too long
... I assume you are working on usegalaxy.org. I do not know what tool you are executing that takes this much time, but it is possible for some tools to take this long with large inputs. Generally if the tool runs into trouble it will stop and show an error that you would see in Galaxy interface. ...
written 10 weeks ago by Martin Čech ♦♦ 4.9k
1
vote
1
answer
112
views
1
answers
Answer: A: raw data (23andme or Ancestry) free access for research
... check out https://www.openhumans.org/ and https://opensnp.org/ ...
written 10 weeks ago by Martin Čech ♦♦ 4.9k
1
vote
1
answer
130
views
1
answers
Answer: C: best galaxy app for viewing plink .bed files
... Your best bet probably is to search for a converter that converts it to something that is viewable. e.g. you could use plink to export it in some format more useful to you. ...
written 3 months ago by Martin Čech ♦♦ 4.9k

Latest awards to Martin Čech

Scholar 4 weeks ago, created an answer that has been accepted. For A: administrator e-mail designation through galaxy.yml.sample
Scholar 4 weeks ago, created an answer that has been accepted. For A: Private vs Public Galaxy: different outcomes following Fastq upload
Scholar 5 weeks ago, created an answer that has been accepted. For A: Private vs Public Galaxy: different outcomes following Fastq upload
Scholar 7 weeks ago, created an answer that has been accepted. For A: Private vs Public Galaxy: different outcomes following Fastq upload
Scholar 4 months ago, created an answer that has been accepted. For A: Private vs Public Galaxy: different outcomes following Fastq upload
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: How to uninstall package which not appear in installed tools menu?
Scholar 4 months ago, created an answer that has been accepted. For A: Private vs Public Galaxy: different outcomes following Fastq upload
Scholar 4 months ago, created an answer that has been accepted. For A: Private vs Public Galaxy: different outcomes following Fastq upload
Scholar 6 months ago, created an answer that has been accepted. For A: Private vs Public Galaxy: different outcomes following Fastq upload
Scholar 6 months ago, created an answer that has been accepted. For A: Private vs Public Galaxy: different outcomes following Fastq upload
Scholar 6 months ago, created an answer that has been accepted. For A: the storage problem
Scholar 7 months ago, created an answer that has been accepted. For A: Private vs Public Galaxy: different outcomes following Fastq upload
Scholar 7 months ago, created an answer that has been accepted. For A: Private vs Public Galaxy: different outcomes following Fastq upload
Scholar 7 months ago, created an answer that has been accepted. For A: Private vs Public Galaxy: different outcomes following Fastq upload
Scholar 8 months ago, created an answer that has been accepted. For A: the storage problem
Scholar 8 months ago, created an answer that has been accepted. For A: the storage problem
Scholar 9 months ago, created an answer that has been accepted. For A: the storage problem
Scholar 11 months ago, created an answer that has been accepted. For A: How to uninstall package which not appear in installed tools menu?
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: How to uninstall package which not appear in installed tools menu?
Scholar 11 months ago, created an answer that has been accepted. For A: How to uninstall package which not appear in installed tools menu?
Scholar 12 months ago, created an answer that has been accepted. For A: How to uninstall package which not appear in installed tools menu?
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: How to uninstall package which not appear in installed tools menu?
Scholar 14 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 21 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 149 users visited in the last hour