Admin: Martin Čech

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Martin Čech ♦♦ 4.3k
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martenson
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Last seen:
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Joined:
4 years, 2 months ago
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Galaxy Team member

Posts by Martin Čech

<prev • 786 results • page 2 of 79 • next >
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Comment: C: How to delete my old data
... Are you aware of 'deleted vs deleted permanently'? Check out [hub page](https://galaxyproject.org/learn/managing-datasets/#delete-vs-delete-permanently) to see the difference. Also logging out and back in will force recalculate your quota usage. ...
written 7 weeks ago by Martin Čech ♦♦ 4.3k
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Comment: C: Invoking galaxy workflows via API and providing fastq as input file
... You surely can use the whole raw Galaxy's API - the documentation is here: https://docs.galaxyproject.org/en/master/api_doc.html For more details and examples please see the [hub page](https://galaxyproject.org/develop/api/) ...
written 7 weeks ago by Martin Čech ♦♦ 4.3k
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Answer: A: Invoking galaxy workflows via API and providing fastq as input file
... The [bioblend](https://bioblend.readthedocs.io/en/latest/index.html) library is usually a very good companion when working with Galaxy's API. 1. see the docs on how to [invoke a workflow](https://bioblend.readthedocs.io/en/latest/api_docs/galaxy/all.html#bioblend.galaxy.workflows.WorkflowClient.in ...
written 8 weeks ago by Martin Čech ♦♦ 4.3k
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Comment: C: Galaxy Quota problem: No change after log in/log out
... Please post your solution as an answer to help other people that might have the same problem, otherwise I will delete this thread. Thanks. ...
written 9 weeks ago by Martin Čech ♦♦ 4.3k
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Comment: C: Succesfully installed tools not shown in tool shed configuration
... It really shouldn't be empty unless you removed all the basic tools (like text manipulation) - did you do that? ...
written 9 weeks ago by Martin Čech ♦♦ 4.3k
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Comment: C: Succesfully installed tools not shown in tool shed configuration
... Can you see them in the `integrated_tool_panel.xml`? During an installation you can also select a non-default shed_tool_conf to be used - check that and also config in `galaxy.ini` ...
written 10 weeks ago by Martin Čech ♦♦ 4.3k
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Answer: A: Can't delete data files in the Luthe Lab Data Library on the Galaxy server at Pe
... Hi Howard, please send this request, together with the link to the library/files privately to [galaxy-bugs@lists.galaxyproject.org](mailto:galaxy-bugs@lists.galaxyproject.org) using the email address that has access to these files and we can delete it for you. ...
written 10 weeks ago by Martin Čech ♦♦ 4.3k
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Comment: C: Galaxy storage problem
... Do you have an estimate how much space you are going to need for your analysis? Note the following quote from https://galaxyproject.org/support/account-quotas/ >If your work is academic research based and additional short-term space is needed at Galaxy Main, please send an email to galaxy-bugs@l ...
written 11 weeks ago by Martin Čech ♦♦ 4.3k
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Comment: C: Galaxy storage problem
... What format was the data you uploaded? 51GB of data should take 51GB of your quota unless the data were zipped and Galaxy unzipped them for you. edit: also make sure to check: https://galaxyproject.org/learn/managing-datasets/#delete-vs-delete-permanently so you are sure you are understanding your ...
written 11 weeks ago by Martin Čech ♦♦ 4.3k
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Answer: C: Succesfully installed tools not shown in tool shed configuration
... The default behavior is that they are added to the `shed_tool_conf.xml`. Did you see any errors during the installation? ...
written 11 weeks ago by Martin Čech ♦♦ 4.3k

Latest awards to Martin Čech

Scholar 7 days ago, created an answer that has been accepted. For A: the storage problem
Scholar 9 weeks ago, created an answer that has been accepted. For A: How to uninstall package which not appear in installed tools menu?
Teacher 12 weeks ago, created an answer with at least 3 up-votes. For A: How to uninstall package which not appear in installed tools menu?
Scholar 12 weeks ago, created an answer that has been accepted. For A: How to uninstall package which not appear in installed tools menu?
Scholar 3 months ago, created an answer that has been accepted. For A: How to uninstall package which not appear in installed tools menu?
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: How to uninstall package which not appear in installed tools menu?
Scholar 5 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 12 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 13 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 13 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 13 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 16 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 16 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 17 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 18 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Scholar 18 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 18 months ago, created an answer that has been accepted. For A: Progresive Mauve not visible as tool
Scholar 18 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 18 months ago, created an answer that has been accepted. For A: R tool in galaxy
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy

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