Admin: Martin Čech

gravatar for Martin Čech
Martin Čech ♦♦ 3.8k
Reputation:
3,750
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Trusted
Location:
United States
Twitter:
martenson
Last seen:
7 hours ago
Joined:
3 years, 5 months ago
Email:
m*****@bx.psu.edu

Galaxy Team member

Posts by Martin Čech

<prev • 678 results • page 1 of 68 • next >
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Answer: A: using snpEff via galaxy
... Do you mean reference genome? Galaxy does not ship with reference data ready (because e.g. Main Galaxy at usegalaxy.org has 4 TB of it) - so if you are using other/local Galaxy you need to obtain it separately. The best way is using Data Manager tools. https://galaxyproject.org/admin/tools/data-man ...
written 1 day ago by Martin Čech ♦♦ 3.8k
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Comment: C: how to access data on galaxy from variantdb
... Where is the data now? This might be a question for the variantdb support, not Galaxy. Although some people around here will probably know. ...
written 2 days ago by Martin Čech ♦♦ 3.8k
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Comment: C: Galaxy -- use of MinION data to convert FastQ to FastA
... What specific trouble are you experiencing? Are these fastq datasets in fastqsanger format? ...
written 5 days ago by Martin Čech ♦♦ 3.8k
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Answer: A: Using Cufflinks v. 2.2.1.5
... Generally Galaxy datasets turn red when the tool writes anything into stderr during the job run. This output should be available if you click the `(i)` icon on the dataset. ...
written 5 days ago by Martin Čech ♦♦ 3.8k
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Answer: A: Issue installing Galaxy on a local server for a multi-user production environmen
... Do you have custom build Python? If so [this thread](http://stackoverflow.com/questions/4998969/assert-error-when-installing-virtualenv-with-different-python#5001555) on SO might be similar to what you are experiencing. This has most probably nothing to do with Galaxy. ...
written 5 days ago by Martin Čech ♦♦ 3.8k
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Comment: C: Graduate student learning to do RNAseq analysis
... What Galaxy server are you using and how are you uploading files to it? ...
written 5 days ago by Martin Čech ♦♦ 3.8k
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Comment: C: Regarding new galaxy
... Where were you using Galaxy? Where is your new Galaxy? Generally you can download or publish any dataset and then upload/import it to any other Galaxy. ...
written 6 days ago by Martin Čech ♦♦ 3.8k
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Comment: C: load workflow create history in config?
... Giving the user an ansible playbook to execute all of this might be the simplest approach here. Depends on how tech savvy your users are. ...
written 15 days ago by Martin Čech ♦♦ 3.8k
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Comment: C: How can I get the ip address of a running Galaxy instance
... Dan's answer is what you want then. :) ...
written 16 days ago by Martin Čech ♦♦ 3.8k
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Answer: A: How can I get the ip address of a running Galaxy instance
... There might be a way how to do this - probably finding some kind of service that reflects back your IP address but generally Galaxy has no way of knowing its own outside IP address because that depends on the network's topology. The 192.168.56.11:8080 is your local network IP address, if your Galaxy ...
written 16 days ago by Martin Čech ♦♦ 3.8k

Latest awards to Martin Čech

Scholar 10 weeks ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 12 weeks ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 12 weeks ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 3 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 6 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 6 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 7 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 8 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Scholar 8 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 8 months ago, created an answer that has been accepted. For A: Progresive Mauve not visible as tool
Scholar 8 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 8 months ago, created an answer that has been accepted. For A: R tool in galaxy
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Scholar 9 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 9 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 10 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 11 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 11 months ago, created an answer that has been accepted. For A: Error of pushing changes to Tool Shed repository
Commentator 11 months ago, created a comment with at least 3 up-votes. For C: Usegalaxy main server down? (Queue not working)
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Transfer from one Galaxy server to another?
Scholar 12 months ago, created an answer that has been accepted. For A: Error of pushing changes to Tool Shed repository

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