Admin: Martin Čech

gravatar for Martin Čech
Martin Čech ♦♦ 3.9k
Reputation:
3,940
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Trusted
Location:
United States
Twitter:
martenson
Last seen:
18 hours ago
Joined:
3 years, 7 months ago
Email:
m*****@bx.psu.edu

Galaxy Team member

Posts by Martin Čech

<prev • 713 results • page 1 of 72 • next >
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Answer: A: FTP Login Account
... Please check [tutorial](https://galaxyproject.org/ftp-upload/) especially the following part: > If you are having trouble connecting to the Main server try enabling passive mode in your client. Also make sure to connect using **FTP or FTPS**. As before, **SFTP** connections will be rejected. Le ...
written 18 hours ago by Martin Čech ♦♦ 3.9k • updated 18 hours ago by Jennifer Hillman Jackson22k
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Answer: C: tool_dependencies.xml Not Working - Why?
... Have you had a look at the Conda package for Busco? https://bioconda.github.io/recipes/busco/README.html If this is the software you want adding it as a dependency to your tool can be as easy as having `busco` in the tool and removing the `tool_dependencies.xml` file. The above assumes that you ha ...
written 21 days ago by Martin Čech ♦♦ 3.9k
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Comment: C: HISAT2 gzip: input_r.fastq.gz: not in gzip format
... I would try importing the data into library again and explicitly setting the type to `.fastq.gz` (or whatever you have) to prevent Galaxy from decompressing it automatically. ...
written 4 weeks ago by Martin Čech ♦♦ 3.9k
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News: The Galaxy Release v17.05 is out
... Dear Galaxy Fans, We are pleased to announce the release of Galaxy 17.05. Thanks to the #usegalaxy committers and you, our community! Full release notes: https://docs.galaxyproject.org/en/master/releases/17.05_announce.html Thanks for using Galaxy! ...
17.05 release news written 5 weeks ago by Martin Čech ♦♦ 3.9k
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Answer: C: Reset password help
... You do not need to be logged in the Tool Shed (TS) to be able to install tools from there. All tools are public in the TS. However I tested password reset for toolshed.g2.bx.psu.edu and it worked fine for me. Please check your spam folder. > Also, is it possible to add tools for Galaxy that I u ...
written 5 weeks ago by Martin Čech ♦♦ 3.9k
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Comment: C: fastqc not found
... You did not tell us what you have so it is difficult to tell you what is missing. What Galaxy and what version of Galaxy is this? Does it use Conda? Are you an admin? Have the fastqc ever worked? Do other tools with dependencies work? ...
written 6 weeks ago by Martin Čech ♦♦ 3.9k
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Comment: C: Inconsistent Cuffdiff Output-Corrected Question
... this question is almost 5 years old, I recommend creating a new one. ...
written 6 weeks ago by Martin Čech ♦♦ 3.9k
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Answer: C: Recalculating Data Usage
... If this is on usegalaxy.org logging out will trigger quota recalculation. If your usage does not change, you most probably did not *permanently* delete all the data. ...
written 7 weeks ago by Martin Čech ♦♦ 3.9k
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Answer: A: Where is tophat2
... Please see the answer here: https://biostar.usegalaxy.org/p/23300/ ...
written 7 weeks ago by Martin Čech ♦♦ 3.9k
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Answer: A: Tophat is not provided anymore?
... Tophat2 has been hidden as there are superior alternatives available. Please see the details here: https://biostar.usegalaxy.org/p/23300/ ...
written 7 weeks ago by Martin Čech ♦♦ 3.9k

Latest awards to Martin Čech

Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 5 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 5 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 5 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 6 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 9 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 9 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 10 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 10 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Scholar 11 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 11 months ago, created an answer that has been accepted. For A: Progresive Mauve not visible as tool
Scholar 11 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 11 months ago, created an answer that has been accepted. For A: R tool in galaxy
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Scholar 12 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 12 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 13 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 14 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 14 months ago, created an answer that has been accepted. For A: Error of pushing changes to Tool Shed repository
Commentator 14 months ago, created a comment with at least 3 up-votes. For C: Usegalaxy main server down? (Queue not working)
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: Transfer from one Galaxy server to another?

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