Admin: Martin Čech

gravatar for Martin Čech
Martin Čech ♦♦ 4.3k
Reputation:
4,350
Status:
Trusted
Location:
United States
Twitter:
martenson
Scholar ID:
Google Scholar Page
Last seen:
1 day, 16 hours ago
Joined:
4 years, 2 months ago
Email:
m*****@bx.psu.edu

Galaxy Team member

Posts by Martin Čech

<prev • 786 results • page 1 of 79 • next >
2
votes
2
answers
47
views
2
answers
Answer: A: the storage problem
... After impersonating your account we have found that you have several deleted histories that are not permanently deleted. Please have a look at https://galaxyproject.org/learn/managing-datasets/#delete-vs-delete-permanently on how to achieve permanent deletion (that cleans up your quota) ...
written 6 days ago by Martin Čech ♦♦ 4.3k
0
votes
1
answer
42
views
1
answers
Answer: A: Covert fast.gz files to fastq
... To my understanding you do not need to run this conversion explicitly, you should be able to select these gzipped files as fastq inputs and Galaxy will run the unzipping for you on the fly. ...
written 6 days ago by Martin Čech ♦♦ 4.3k
0
votes
2
answers
47
views
2
answers
Comment: C: the storage problem
... I do not see an email form you there, could you please make sure it went out? ...
written 6 days ago by Martin Čech ♦♦ 4.3k
0
votes
2
answers
47
views
2
answers
Answer: A: the storage problem
... There is not a known issue regarding this, please write an email with your account name to `galaxy-bugs@lists.galaxyproject.org` ...
written 7 days ago by Martin Čech ♦♦ 4.3k
1
vote
1
answer
42
views
1
answers
Answer: A: Prokka annotation error
... We are tracking the issue here: https://github.com/galaxyproject/tools-iuc/issues/1707 ...
written 13 days ago by Martin Čech ♦♦ 4.3k
1
vote
1
answer
83
views
1
answers
Answer: A: FTP user home with "real" username
... Could you leverage this [config option](https://github.com/galaxyproject/galaxy/blob/release_17.09/config/galaxy.ini.sample#L1201) - `ftp_upload_dir_identifier`? ...
written 29 days ago by Martin Čech ♦♦ 4.3k • updated 29 days ago by Jennifer Hillman Jackson24k
2
votes
1
answer
67
views
1
answers
Answer: A: How to add a single dataset into an existing dataset list in Galaxy
... Dataset lists (or collections) are created immutable (the instance cannot be changed). However I believe you can achieve your goal by using the tools from 'Collection operations' section on usegalaxy.org. Namely using `Filter failed` tool to remove the erred datasets and then creating a new list wit ...
written 5 weeks ago by Martin Čech ♦♦ 4.3k
1
vote
1
answer
89
views
1
answers
Answer: C: Galaxy deleted all data and won't let me see new history/data upload
... You should always be prompted when purging I think, maybe you hit enter on the alert and confirmed? The 'purged' flag is also weird and shouldn't be happening. If I were you I would copy my data to a new history and continue from there, ignoring this purged-but-not-purged one. ...
written 6 weeks ago by Martin Čech ♦♦ 4.3k
0
votes
1
answer
89
views
1
answers
Comment: C: Galaxy deleted all data and won't let me see new history/data upload
... Your first history seems to have your fastq.gz files - I can see it when impersonating your account. Does the problem still persist for you? ...
written 6 weeks ago by Martin Čech ♦♦ 4.3k
2
votes
2
answers
96
views
2
answers
Answer: A: Can I submit the next step when this step is still processing (yellow)
... The way this is done is called a workflow and you can reach the interface to build them from the top Galaxy menu. Read more here: https://galaxyproject.org/learn/advanced-workflow/ edit: it is also safe to do it manually as you described, the workflow is a superior solution though ...
written 6 weeks ago by Martin Čech ♦♦ 4.3k

Latest awards to Martin Čech

Scholar 6 days ago, created an answer that has been accepted. For A: the storage problem
Scholar 9 weeks ago, created an answer that has been accepted. For A: How to uninstall package which not appear in installed tools menu?
Teacher 12 weeks ago, created an answer with at least 3 up-votes. For A: How to uninstall package which not appear in installed tools menu?
Scholar 12 weeks ago, created an answer that has been accepted. For A: How to uninstall package which not appear in installed tools menu?
Scholar 3 months ago, created an answer that has been accepted. For A: How to uninstall package which not appear in installed tools menu?
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: How to uninstall package which not appear in installed tools menu?
Scholar 5 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 12 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 12 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 12 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 13 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 16 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 16 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 17 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 18 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Scholar 18 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 18 months ago, created an answer that has been accepted. For A: Progresive Mauve not visible as tool
Scholar 18 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 18 months ago, created an answer that has been accepted. For A: R tool in galaxy
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 112 users visited in the last hour