Admin: Martin Čech

gravatar for Martin Čech
Martin Čech ♦♦ 3.9k
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Twitter:
martenson
Last seen:
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3 years, 6 months ago
Email:
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Galaxy Team member

Posts by Martin Čech

<prev • 702 results • page 1 of 71 • next >
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Comment: C: local galaxy instance sqlite3.OperationError
... This seems like your system has trouble creating the sqlite database. Can you try using PostgreSQL instead? See [this](https://galaxyproject.org/admin/config/performance/production-server/#switching-to-a-database-server) on how to do this. ...
written 2 days ago by Martin Čech ♦♦ 3.9k
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Comment: C: Install dependencies for local galaxy installation
... What version is your Galaxy. Do you know if it has Conda enabled? Could you share the error messages? Are there any errors in the Galaxy log? ...
written 5 days ago by Martin Čech ♦♦ 3.9k
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Comment: C: Install dependencies for local galaxy installation
... Can you please link what tool you are trying to install and what is your version of Galaxy? ...
written 6 days ago by Martin Čech ♦♦ 3.9k
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Answer: A: Galaxy data security
... I assume you are talking about the Main instance at https://usegalaxy.org. My answers reflect that. Other Galaxy deployments will have different setup. > When I upload my data am I the only one who has access to it? Technically no. Data is not encrypted so people with access to the hardware co ...
written 6 days ago by Martin Čech ♦♦ 3.9k
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Answer: C: Error downloading Galaxy
... What operating system are you running? Please see [this answer](http://stackoverflow.com/questions/25926495/symbol-not-found-sincos-stret#comment40586563_25926495) on stack overflow for similar issue. ...
written 9 days ago by Martin Čech ♦♦ 3.9k
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Answer: C: How to share a data library with other users
... I think the problem here is twofold: The permissions concept is a bit daunting and you are using the old library interface. In order to allow users to see shared data they need to have the 'access permission' on the dataset itself. Confusingly the old interface does not provide an option to do that ...
written 9 days ago by Martin Čech ♦♦ 3.9k
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Comment: C: toolshed repository - "This revision can be installed: False" - why?
... I am glad you solved this. Seems that the Tool Shed (or the library it uses for XML parsing) is more strict than the standard reference and it deemed your XML file invalid thus not allowing installation. Would you mind creating a [Github Issue](https://github.com/galaxyproject/galaxy/issues) to star ...
written 13 days ago by Martin Čech ♦♦ 3.9k
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Comment: C: How to install a software in Galaxy?
... In addition to the links provided by Jen you should check out the [Building tools with Planemo tutorial](http://planemo.readthedocs.io/en/latest/writing_standalone.html) ...
written 13 days ago by Martin Čech ♦♦ 3.9k
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Comment: C: Galaxy API file upload times out
... To me this seems more and more as a network problem on your collaborator's side. I can hardly imagine a situation where Galaxy would single out one user and fail their upload jobs. You can try sharing your script and maybe we can spot something fishy together but given you are not able to reproduc ...
written 14 days ago by Martin Čech ♦♦ 3.9k
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Answer: C: Galaxy API file upload times out
... Given it works within your institution and times out for externals I would suspect network problem as the culprit. Is this python script already used as a Galaxy tool (i.e. are the external users executing a custom Galaxy tool to upload to the internal Galaxy) or is this a standalone script? Does ...
written 17 days ago by Martin Čech ♦♦ 3.9k

Latest awards to Martin Čech

Teacher 14 days ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 3 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 3 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 3 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 4 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 7 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 7 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 8 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 9 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Scholar 9 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 9 months ago, created an answer that has been accepted. For A: Progresive Mauve not visible as tool
Scholar 9 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 9 months ago, created an answer that has been accepted. For A: R tool in galaxy
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Scholar 10 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 10 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 11 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 12 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 12 months ago, created an answer that has been accepted. For A: Error of pushing changes to Tool Shed repository
Commentator 13 months ago, created a comment with at least 3 up-votes. For C: Usegalaxy main server down? (Queue not working)
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: Transfer from one Galaxy server to another?

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