Admin: Martin Čech

gravatar for Martin Čech
Martin Čech ♦♦ 4.7k
Reputation:
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Location:
United States
Last seen:
11 hours ago
Joined:
4 years, 7 months ago
Email:
m*****@bx.psu.edu

Galaxy Team member

Posts by Martin Čech

<prev • 835 results • page 1 of 84 • next >
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Answer: A: Install galaxy locally on Windows
... Galaxy will not run on Windows. Use the preconfigured Galaxy docker image: https://hub.docker.com/r/bgruening/galaxy-stable/ using Kitematic. Alternatively you can create a virtual machine (using e.g. VirtualBox) and install e.g. Ubuntu there. Then you can run Galaxy. ...
written 1 day ago by Martin Čech ♦♦ 4.7k
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Answer: A: Delete repositories from Test Tool Shed
... There is really no good way to do this. I suggest creating a new repository. ...
written 5 days ago by Martin Čech ♦♦ 4.7k
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Answer: A: Server error in RNAseqTRAPLINE manual
... This looks like a bug, I made an issue in order to fix it, you can track it here: https://github.com/galaxyproject/galaxy/issues/6353 ...
written 5 days ago by Martin Čech ♦♦ 4.7k
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Answer: A: visualization tutorial galaxy
... I suggest looking at various RNA-seq trainings listed here: http://galaxyproject.github.io/training-material/topics/transcriptomics/ ...
written 5 days ago by Martin Čech ♦♦ 4.7k
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Answer: A: 18.05 administration Charts: grueler or iuc
... You are correct. Aysam Guerler is a Galaxy Team member who created the charts framework but have decided to migrate to the IUC repository recently. Hence the change and the release note. ...
written 5 days ago by Martin Čech ♦♦ 4.7k
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Comment: C: failed to FTP file to galaxy
... > We think that you shouldn't switch histories while this is going on, so plan it so that won't be a problem. Open a new tab with Galaxy and work there, leaving the large upload in its own tab that you don't use until finished. ...
written 11 days ago by Martin Čech ♦♦ 4.7k
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Answer: A: failed to FTP file to galaxy
... How large are the files you are trying to upload? With the changes in the latest Galaxy release 18.05 you should be able to upload many gigabytes directly at https://usegalaxy.org using your browser. That might save you the headache of troubleshooting something we are not able to reproduce. ...
written 12 days ago by Martin Čech ♦♦ 4.7k
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Comment: C: Galaxy Api run tool
... I am no curl guru so I would probably catch/log the requests and compare them. ...
written 14 days ago by Martin Čech ♦♦ 4.7k
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Answer: C: Galaxy Api run tool
... I assume in the actual call you replace `my_key` with your actual API key. Is that correct? edit: check out the Galaxy API library for Python: http://bioblend.readthedocs.io/en/latest/api_docs/galaxy/all.html#bioblend.galaxy.tools.ToolClient.run_tool ...
written 15 days ago by Martin Čech ♦♦ 4.7k
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Comment: C: Cannot add an admin account after modifying galaxy.yml
... I am fairly confident this is a configuration issue on your side, since this is the only report we got regarding this. Are you sure you have only one Galaxy instance running? Do you see any errors if you open browser's javascript console? If you change some other value in the config, can you see its ...
written 23 days ago by Martin Čech ♦♦ 4.7k

Latest awards to Martin Čech

Scholar 5 days ago, created an answer that has been accepted. For A: Private vs Public Galaxy: different outcomes following Fastq upload
Scholar 5 days ago, created an answer that has been accepted. For A: Private vs Public Galaxy: different outcomes following Fastq upload
Scholar 7 weeks ago, created an answer that has been accepted. For A: Private vs Public Galaxy: different outcomes following Fastq upload
Scholar 7 weeks ago, created an answer that has been accepted. For A: Private vs Public Galaxy: different outcomes following Fastq upload
Scholar 7 weeks ago, created an answer that has been accepted. For A: the storage problem
Scholar 11 weeks ago, created an answer that has been accepted. For A: Private vs Public Galaxy: different outcomes following Fastq upload
Scholar 12 weeks ago, created an answer that has been accepted. For A: Private vs Public Galaxy: different outcomes following Fastq upload
Scholar 3 months ago, created an answer that has been accepted. For A: Private vs Public Galaxy: different outcomes following Fastq upload
Scholar 3 months ago, created an answer that has been accepted. For A: the storage problem
Scholar 3 months ago, created an answer that has been accepted. For A: the storage problem
Scholar 4 months ago, created an answer that has been accepted. For A: the storage problem
Scholar 6 months ago, created an answer that has been accepted. For A: How to uninstall package which not appear in installed tools menu?
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: How to uninstall package which not appear in installed tools menu?
Scholar 6 months ago, created an answer that has been accepted. For A: How to uninstall package which not appear in installed tools menu?
Scholar 7 months ago, created an answer that has been accepted. For A: How to uninstall package which not appear in installed tools menu?
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: How to uninstall package which not appear in installed tools menu?
Scholar 9 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 16 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 17 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 17 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 17 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 20 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 20 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?

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