Admin: Martin Čech

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Martin Čech ♦♦ 4.0k
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martenson
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Joined:
3 years, 9 months ago
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m*****@bx.psu.edu

Galaxy Team member

Posts by Martin Čech

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Comment: C: How to create and run a pipeline using BioBlend and Galaxy API?
... Bunch of examples can also be found at our tests: https://github.com/galaxyproject/galaxy/blob/dev/test/api/test_tools.py ...
written 8 hours ago by Martin Čech ♦♦ 4.0k
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14
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Answer: A: Using galaxy friendly interface with private server
... Yes, everybody can run their own Galaxy and use whatever server resources they have access to for job running. Linux or MacOS are required for Galaxy, but tools themselves can be run on Windows too. See http://getgalaxy.org for more choices see: https://galaxyproject.org/choices/ ...
written 1 day ago by Martin Čech ♦♦ 4.0k
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Comment: C: Uploading file to local Galaxy fails with "Failed: Bad Request (400)
... Have you configured a proxy server by any chance? That could complicate uploading. Otherwise the upload should just work out of the box. ...
written 4 days ago by Martin Čech ♦♦ 4.0k
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Answer: C: Add Frogs into galaxy
... frogs does not seem to be wrapped for Galaxy yet - I suggest you create an issue for it on the [IUC github](https://github.com/galaxyproject/tools-iuc/issues?q=is%3Aopen+is%3Aissue+label%3A%22tool+request%22) and maybe someone will find time to work on that. You could also send an email to the [devl ...
written 15 days ago by Martin Čech ♦♦ 4.0k
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Answer: A: Research on RNA SEQ
... Please see the information on this page: https://galaxyproject.org/support/account-quotas/#i-purged-but-still-need-more-space- tl,dr: you might be able to get space cleaning up unwanted data, or you can send us an email to galaxy-bugs@lists.galaxyproject.org and ask for larger quota (I think you ha ...
written 17 days ago by Martin Čech ♦♦ 4.0k
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Answer: A: List of tools found in the default install of Galaxy
... these are the tools shipped with Galaxy https://github.com/galaxyproject/galaxy/blob/dev/config/tool_conf.xml.sample ...
written 18 days ago by Martin Čech ♦♦ 4.0k
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40
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Comment: C: Main Galaxy Instance down for days?
... The status page is often not up to date. :/ Sorry for the inconvenience. ...
written 22 days ago by Martin Čech ♦♦ 4.0k
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40
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Answer: A: Main Galaxy Instance down for days?
... Hi, the Main Galaxy at https://usegalaxy.org/ has not been down in the last week. Is that the address you are trying to connect to? How does the error look like? ...
written 22 days ago by Martin Čech ♦♦ 4.0k
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Comment: C: How to resolve the reason for job was terminated
... This message is relevant to the RAM of the machine that ran the job, not your quota. How large are you inputs? ...
written 4 weeks ago by Martin Čech ♦♦ 4.0k
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Answer: A: Assign more CPU Cores for Jobs
... Thanks for clarification. cufflinks, tophat, bowtie Galaxy tools are multithread-ready as they have the GALAXY_SLOTS property in the wrapper defined. There is some more documentation on how to set up slots in the job_conf [here](https://galaxyproject.org/admin/config/galaxy_slots/) and [here](http ...
written 4 weeks ago by Martin Čech ♦♦ 4.0k

Latest awards to Martin Čech

Scholar 15 days ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 7 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 7 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 7 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 8 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 11 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 11 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 12 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 12 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Scholar 13 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 13 months ago, created an answer that has been accepted. For A: Progresive Mauve not visible as tool
Scholar 13 months ago, created an answer that has been accepted. For A: R tool in galaxy
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Teacher 14 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
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Scholar 16 months ago, created an answer that has been accepted. For A: Error of pushing changes to Tool Shed repository
Commentator 16 months ago, created a comment with at least 3 up-votes. For C: Usegalaxy main server down? (Queue not working)

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