Admin: Martin Čech

gravatar for Martin Čech
Martin Čech ♦♦ 3.7k
Reputation:
3,740
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Trusted
Location:
United States
Twitter:
martenson
Last seen:
3 hours ago
Joined:
3 years, 4 months ago
Email:
m*****@bx.psu.edu

Galaxy Team member

Posts by Martin Čech

<prev • 659 results • page 1 of 66 • next >
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Comment: C: how to Installing Tools into Galaxy from Tool Shed
... You cannot. Only admins can install tools to Galaxies. Also please create your own question next time. ...
written 1 day ago by Martin Čech ♦♦ 3.7k
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Answer: A: Restart a Galaxy analysis
... For one tool only - click on the 'rerun' button in the output dataset. For more tools in a series - create a worflow. ...
written 3 days ago by Martin Čech ♦♦ 3.7k
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Answer: A: Error when trying to change email: Uncaught exception in exposed API method:
... This looks like a bug. I created an issue for it, you can track it to see when it is fixed. https://github.com/galaxyproject/galaxy/issues/3765 ...
written 7 days ago by Martin Čech ♦♦ 3.7k
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Answer: A: Is it possible to add custom JavaScript tool in Galaxy
... Two things come to my mind when adding custom frontend JS to Galaxy, none of them are tools per se though. * Visualizations https://galaxyproject.org/develop/visualizations/ * Webhooks https://docs.galaxyproject.org/en/latest/admin/special_topics/webhooks.html Galaxy does not support normal tools ...
written 9 days ago by Martin Čech ♦♦ 3.7k
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Answer: A: Need help with changing galaxy.ini to fix freezing Pilon in Cloning stage
... Pilon wrapper is being developed here: https://github.com/galaxyproject/tools-iuc/tree/master/tools/pilon (this url is listed on the repository's [page](https://toolshed.g2.bx.psu.edu/view/iuc/pilon/fe0dc27e6327) in the Tool Shed) That said this does not seem like the tool's problem because Pilon i ...
written 23 days ago by Martin Čech ♦♦ 3.7k
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Comment: C: Why Pilon freezes in Cloning stage on installation and never completes installa
... This does not seem relevant to the Pilon issue. Any other errors in the logs during the Pilon installation? ...
written 23 days ago by Martin Čech ♦♦ 3.7k
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Answer: A: Are there any working alternative Tool repositories available for Galaxy?
... Some other public Tool Sheds that host repositories with Galaxy tools are listed in the bottom of this page: https://new.galaxyproject.org/public-galaxy-servers/ However we do not guarantee any level of security for these servers or the repositories' contents so tread carefully. That said if your ...
written 23 days ago by Martin Čech ♦♦ 3.7k
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Answer: A: An entertaining read about BWA, Picard, GATK
... Hi apozhitkov, which parts were the most difficult for you to figure out? Do you have any suggestions for us? Thanks, M. ...
written 24 days ago by Martin Čech ♦♦ 3.7k
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Comment: C: Why Pilon freezes in Cloning stage on installation and never completes installa
... Do you see any errors in the Galaxy log? ...
written 24 days ago by Martin Čech ♦♦ 3.7k
1
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72
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Answer: A: How to install Pilon manually? It does not go via a toolshed.
... Pilon is installable via Tool Shed using this repository: https://toolshed.g2.bx.psu.edu/view/iuc/pilon/fe0dc27e6327 and corresponding Conda package from bioconda channel. If you are new to using Galaxy with Conda please read through https://docs.galaxyproject.org/en/master/admin/conda_faq.html TL ...
written 28 days ago by Martin Čech ♦♦ 3.7k

Latest awards to Martin Čech

Scholar 6 weeks ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 8 weeks ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 8 weeks ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 10 weeks ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 5 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 5 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 6 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Change colour of datasets in the history pane?
Scholar 7 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Scholar 7 months ago, created an answer that has been accepted. For A: Change colour of datasets in the history pane?
Scholar 7 months ago, created an answer that has been accepted. For A: Progresive Mauve not visible as tool
Scholar 7 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 7 months ago, created an answer that has been accepted. For A: R tool in galaxy
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Scholar 8 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 8 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 9 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 10 months ago, created an answer that has been accepted. For A: R tool in galaxy
Scholar 10 months ago, created an answer that has been accepted. For A: Error of pushing changes to Tool Shed repository
Commentator 10 months ago, created a comment with at least 3 up-votes. For C: Usegalaxy main server down? (Queue not working)
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: Transfer from one Galaxy server to another?
Scholar 11 months ago, created an answer that has been accepted. For A: Error of pushing changes to Tool Shed repository

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